Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 390 a.a., Putative type II secretion system protein F from Methylophilus sp. DMC18

 Score =  125 bits (313), Expect = 3e-33
 Identities = 97/384 (25%), Positives = 180/384 (46%), Gaps = 19/384 (4%)

Query: 20  IEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFKRGISTPDLALITRQLATLV 79
           ++ D+ +    +LK + L+ + + + Q +   ++ Q F          LAL +++L  L+
Sbjct: 18  LQADDEQDAYAQLKAKGLLLVSL-QAQRQGKIAKRQAFP---------LALFSQELLALL 67

Query: 80  QSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLGDYPHVFDELFRSMVAA 139
            SG+ L E + A+A + +    R +L  +   + +G + S +L     VF  L+ + V A
Sbjct: 68  DSGLNLVEAIDALALRQD--HTRGVLQGILQSLQQGKSFSAALERQSAVFPPLYIATVKA 125

Query: 140 GEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFAVGIVAFLLAAVVPKIVGQ 199
            E++G L + L R   Y      ++ K+  A IYP++L+V    ++AFL+  VVPK    
Sbjct: 126 AERTGDLGNALSRYIAYDNQVSLLKKKIVSASIYPLLLIVVGGLVIAFLMGFVVPKFSSV 185

Query: 200 FVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYLVRWLLTKPDIRLRWDRRVISL 259
           +   G  LP  +Q +L     +   G  +L  L+ ++ ++  LL  P +R    R +  +
Sbjct: 186 YEGTGADLPWMSQLMLQWGSLIAQHGELMLTLLVSVLVMLVVLLKHPAMRQWMLRTLWRI 245

Query: 260 PVIGKIARGLNTARFARTLSICTSSAIPI---LDGMRVAVDVMTNQFVKQQVLAAAENVR 316
           P IG+  +    ARF RTL +  +   P+   LD +   +D      +KQ    A   + 
Sbjct: 246 PAIGEKLQLYQLARFYRTLGMLLAGGTPVMVALDSLEGLLDSSLALSLKQ----AQTMIS 301

Query: 317 EGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQDNSFESTVNIALGIFTP 376
           +G  L +A +   +  P+   M+  GE+ G +  M+ R A   D      ++    +F P
Sbjct: 302 QGQPLSQAFQVNGMTTPIGERMLLVGERGGNVAQMMDRIASFYDEELARWIDWFTRLFEP 361

Query: 377 ALIALMAGMVLFIVMATLMPILEM 400
            L+  +  ++  +V+   MPI E+
Sbjct: 362 LLMLFIGLVIGVVVLLLYMPIFEL 385