Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 407 a.a., Type II secretion system protein F from Methylophilus sp. DMC18

 Score =  205 bits (522), Expect = 2e-57
 Identities = 121/406 (29%), Positives = 209/406 (51%), Gaps = 12/406 (2%)

Query: 2   AAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFKR 61
           + + ++  D KG+  KG +  +    V   L+ Q +   +V          +    A K 
Sbjct: 9   SVYLWEGKDRKGKLIKGEMRANGEAVVNATLRRQGISVSKV---------KKQSSLATKG 59

Query: 62  GISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDS 121
            +S  D+ L TRQLAT++++G+PL +    V +    P +  +L  ++A V  G +LS +
Sbjct: 60  KVSEKDVTLFTRQLATMMKAGVPLLQAFDIVGKGHHNPAVSKLLGDIKADVETGSSLSAA 119

Query: 122 LGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFA 181
              YP  FD+LF ++V AGE++G LD++LERLA Y E    ++SK++ A++YP  ++V A
Sbjct: 120 FRKYPLHFDQLFCNLVGAGEQAGILDALLERLATYKEKILAIKSKIKSALVYPTSIIVVA 179

Query: 182 VGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLL--VGLLMLIYLV 239
             I A ++  VVP     F   G  LP  T  +++ SDF   W  ++   +G  +  +  
Sbjct: 180 FVITAVIMIFVVPSFKELFSSFGADLPGPTVVVINLSDFFVKWWWAIFGSLGGGLWFFFY 239

Query: 240 RWLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVM 299
            W      ++   DR ++ LP+ G++ R    ARFARTLS   ++ +P+++ +       
Sbjct: 240 TW-KRSAKLQATMDRLMLRLPIFGELIRKATIARFARTLSTMFAAGVPLVEALDSVAGAS 298

Query: 300 TNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQ 359
            NQ            V  G+SL  A++ T +FP M++ M A GE+SG L+ MLT+ AD  
Sbjct: 299 GNQVYFDATKKIQSEVSTGTSLTVAMQNTNVFPNMVIQMTAIGEESGSLDSMLTKVADFY 358

Query: 360 DNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLMS 405
           +   +  V     +  P ++ ++  ++  +V+A  MPI +M  ++S
Sbjct: 359 EGEVDDAVAAISSLMEPVIMVVLGVLIGGLVVAMYMPIFKMGKVVS 404