Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 400 a.a., Type IV fimbrial assembly protein PilC from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  155 bits (393), Expect = 2e-42
 Identities = 97/402 (24%), Positives = 202/402 (50%), Gaps = 11/402 (2%)

Query: 4   FEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFKRGI 63
           + ++ ++ KG+ ++ V+  DN   +   L+ Q ++P+ +    V AA  + +        
Sbjct: 7   WRWQGVNDKGQLEQDVVWADNRLALIITLQHQRIMPLRIKRMGVNAALWKEE-------- 58

Query: 64  STPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLG 123
                A I  QLATL+ +G+ L E L  +A+Q    + + +L  +  ++ +G   S +L 
Sbjct: 59  ---QSAEIIHQLATLIHAGLTLSEGLELLAKQHPHRQWQALLRTLAHELEQGVPFSSALV 115

Query: 124 DYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFAVG 183
            +P VF  L+++M+  GE +G L      LA   + ++++   +++A+ YP +++  A  
Sbjct: 116 SWPQVFPPLYQTMIRTGELTGKLAECCFELARQQKAQRQITVSVKKALRYPAIILTMAAL 175

Query: 184 IVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYLVRWLL 243
           +V  +L  V+P+    +      LP  T+ ++  + +   WG  +L   +++    R + 
Sbjct: 176 VVFAMLHFVLPEFAAIYRSFNTPLPLLTRGIIAIAQWGSAWGWLILFLTMLVAIAHRRVK 235

Query: 244 TKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVMTNQF 303
            KP  + +  R ++ LPV+G++ RG   A+    L++  S+ IP L G+  A+D +   +
Sbjct: 236 QKPSWQAQRQRLLLRLPVMGRLIRGQKLAQIFTVLALTQSAGIPFLQGLESAIDSLGCPY 295

Query: 304 VKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQDNSF 363
             Q++    + +  G+ +  AL+ T+ F P+ L ++ +GE SG L+ ML   A +   + 
Sbjct: 296 WSQRLTQVHQEIAAGNPVWLALKNTQEFSPLCLQLVRTGEASGSLDIMLHNLARHHSETT 355

Query: 364 ESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLMS 405
            +  +    +  PAL+ +   ++  +V+A  +PI  + + MS
Sbjct: 356 LALADNLASLLEPALLIITGLIIGTLVVAMYLPIFHLGDAMS 397