Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 398 a.a., general secretory pathway component, cryptic (NCBI) from Escherichia coli BW25113

 Score =  332 bits (850), Expect = 2e-95
 Identities = 178/403 (44%), Positives = 272/403 (67%), Gaps = 8/403 (1%)

Query: 4   FEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFKRGI 63
           + Y+A+   G+  +G+I+ ++ RQ R RL+E+ L  +++   +    ++R      +  I
Sbjct: 3   YRYRAMTQDGQKLQGIIDANDERQARLRLREEGLFLLDIRPQKSSGVKTR------RPRI 56

Query: 64  STPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLG 123
           S  +L L TRQLATL  + +PLEE L  + +QS   R+  +L  VR+ + EG+ LSD+L 
Sbjct: 57  SHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNKRLGDVLNQVRSAILEGHPLSDALQ 116

Query: 124 DYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFAVG 183
            +P +FD L+R++V AGEKSG L  VLE+LADY ENRQK+RSKL Q++IYP +L   A+G
Sbjct: 117 HFPTLFDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQSLIYPCMLTTVAIG 176

Query: 184 IVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYLVRWL- 242
           +V  LL AVVPKI  QFV M Q LP ST+ LL  SD LQ  G +LL   + ++ +  WL 
Sbjct: 177 VVIILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQRTGPTLLA-TVFIVAVGFWLW 235

Query: 243 LTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVMTNQ 302
           L + + R R+   ++ + +IG +   +N+AR+ RTLSI  SS +P+LDGM ++ + + N 
Sbjct: 236 LKRGNNRHRFHAMLLRVALIGPLICAINSARYLRTLSILQSSGVPLLDGMNLSTESLNNL 295

Query: 303 FVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQDNS 362
            ++Q++  AAENVR+G+S+  +LEQT +FPPMML+M+ASGE+SG+L  ++ RAADNQ+  
Sbjct: 296 EIRQRLANAAENVRQGNSIHLSLEQTAIFPPMMLYMVASGEKSGQLGTLMVRAADNQETL 355

Query: 363 FESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLMS 405
            ++ + + L IF PALI  MA +VLFIV++ L P+L++N++++
Sbjct: 356 QQNRIALTLSIFEPALIITMALIVLFIVVSVLQPLLQLNSMIN 398