Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 400 a.a., assembly protein in type IV pilin biogenesis, transmembrane protein (NCBI) from Escherichia coli BW25113

 Score =  153 bits (387), Expect = 8e-42
 Identities = 95/403 (23%), Positives = 200/403 (49%), Gaps = 13/403 (3%)

Query: 4   FEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFKRGI 63
           + +  +   G  + G++  ++   +   L++Q + P+ +    + +A+ R          
Sbjct: 7   WRWHGITGDGNAQDGMLWAESRTLLLMALQQQMVTPLSLKRIAINSAQWRGD-------- 58

Query: 64  STPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLG 123
                A +  QLATL+++G+ L E L  +AEQ    + + +L ++   + +G   S++L 
Sbjct: 59  ---KSAEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALL 115

Query: 124 DYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFAVG 183
            +  VF  L+++M+  GE +G LD     LA   + ++++  K++ A+ YP++++  A+ 
Sbjct: 116 PWSEVFPPLYQAMIRTGELTGKLDECCFELARQQKAQRQLTDKVKSALRYPIIILAMAIM 175

Query: 184 IVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYLVRWLL 243
           +V  +L  V+P+    +      LPA TQ ++  +DF   W   L++   +L    + L+
Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWSWLLVLFGFLLAIANKLLM 235

Query: 244 TKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVMTNQF 303
            +P   +   + ++ +P++G + RG    +    L++  S+ I  L G+    + M   +
Sbjct: 236 RRPTWLIVRQKLLLRIPIMGSLMRGQKLTQIFTILALTQSAGITFLQGVESVRETMRCPY 295

Query: 304 VKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAA-DNQDNS 362
             Q +     ++  G  +  AL+ T  F P+ L ++ +GE SG L+ ML   A  +++N+
Sbjct: 296 WVQLLTQIQHDISNGQPIWLALKNTGEFSPLCLQLVRTGEASGSLDLMLDNLAHHHRENT 355

Query: 363 FESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLMS 405
                N+A  +  PAL+ +  G++  +V+A  +PI  + + MS
Sbjct: 356 MALADNLA-ALLEPALLIITGGIIGTLVVAMYLPIFHLGDAMS 397