Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 399 a.a., type II secretion system inner membrane protein GspF from Erwinia tracheiphila SCR3

 Score =  328 bits (842), Expect = 1e-94
 Identities = 173/404 (42%), Positives = 261/404 (64%), Gaps = 11/404 (2%)

Query: 4   FEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFKRG- 62
           + + A D++G+  +G +E ++   +R  L+E+ +  +        AAR R      +R  
Sbjct: 3   YSFLASDSQGQEIRGTLEANSESHLRDLLREKKMTLL--------AARQRENATGLRRRQ 54

Query: 63  --ISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSD 120
             IS  DL+L+TRQLAT+V S MPL+E L AVA QSEKP +  ++  +R  V  G +   
Sbjct: 55  QRISDADLSLMTRQLATMVASSMPLDEALHAVAHQSEKPAVVCVVQQLREMVVSGLSFEQ 114

Query: 121 SLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVF 180
           +L  +PH F+  + +MVAAGE SG+L+ VL RLA Y E RQ M++KL Q ++YP +L + 
Sbjct: 115 ALLSFPHTFERFYCAMVAAGEASGYLNVVLLRLAQYIEKRQIMKNKLVQVLLYPALLTLV 174

Query: 181 AVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYLVR 240
            +G+V  LL +VVP+++ QF+QM   LP +T+ LL  SD ++ +G+ ++  L+  +   R
Sbjct: 175 TIGVVTILLTSVVPQVMSQFIQMKVELPWTTRLLLTLSDSIRDFGVPVVAVLMGGLMAWR 234

Query: 241 WLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVMT 300
           W L KP+  L + RR++ +P+ G++AR +N AR+A+TL I T+SA+P+L+ MR+A  V+ 
Sbjct: 235 WSLRKPENMLCFHRRMLRIPIAGRLAREINAARYAKTLCILTASAVPLLESMRIAARVLA 294

Query: 301 NQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQD 360
           N + +QQ+  A E V EG SL +AL  T+LF PMM HMIA+GE+SGEL  ML  AAD QD
Sbjct: 295 NSYARQQLTDACEQVYEGKSLHQALSATRLFSPMMNHMIAAGERSGELNQMLEHAADLQD 354

Query: 361 NSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLM 404
                 + ++LGIF  ALI +MA  VLFI+M+ L PIL++N ++
Sbjct: 355 EILNHRLTLSLGIFEQALIIVMASAVLFIIMSILQPILKLNTMV 398