Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 399 a.a., protein transport protein HofC from Erwinia tracheiphila SCR3

 Score =  160 bits (406), Expect = 5e-44
 Identities = 97/403 (24%), Positives = 209/403 (51%), Gaps = 13/403 (3%)

Query: 4   FEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFKRGI 63
           F ++A+  +G+   G     + ++    L   +L+ +++   +    R RS  + ++  I
Sbjct: 7   FNWQAIGNEGQRLNGAFFCQHRQEAMDNLLALNLISLKLTSGR----RYRSIDWQWQDKI 62

Query: 64  STPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLG 123
           +        RQLATL+++GM L + L+   E       + +L  ++ +++ G   SD+L 
Sbjct: 63  N------FFRQLATLLKAGMSLSDALQLTCEGHSNAGWQALLAHLQHRISNGVPFSDALT 116

Query: 124 DYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFAVG 183
           ++P +F  LF +++  GE +G +D    +LAD  E + +++ K+ +A+ YP++++  A+ 
Sbjct: 117 EWPIIFPPLFPALIQIGELTGRMDECCLQLADQQERQHQLQKKVTKALRYPLIVLAIALL 176

Query: 184 IVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYLV-RWL 242
           +   +L  V+P+ V  +      LP  T  ++  S+ +QH+G  L +  L +IYL  RW 
Sbjct: 177 VSLGMLLFVLPEFVAIYQAFDAPLPGFTAAVIALSEAIQHYG-PLFLPFLFIIYLSWRWQ 235

Query: 243 LTK-PDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVMTN 301
             + P+ + R  + ++ LP+ G + RG   +R   TL++   + + +LD ++     ++ 
Sbjct: 236 NRRSPNWQRRQQQILLKLPLAGDLIRGGQLSRIFMTLALTQHAGLTLLDSLQALEKTLSQ 295

Query: 302 QFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQDN 361
           +  ++ V A  +++  G+ L KA++   LF P+   ++  GE+SG L+ ML+R A+  + 
Sbjct: 296 RLWRETVAALQQHISAGNPLYKAMKNHTLFTPLCYQLVKVGEESGSLDSMLSRLAERYET 355

Query: 362 SFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLM 404
           S     +       P ++ ++  +V  +V+A  +P+  + + +
Sbjct: 356 STNELADNLAEALEPVMMIVIGLIVATLVVAMYLPVFNLGSAL 398