Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 400 a.a., protein transport protein HofC from Escherichia coli ECRC101

 Score =  157 bits (397), Expect = 5e-43
 Identities = 97/403 (24%), Positives = 200/403 (49%), Gaps = 13/403 (3%)

Query: 4   FEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFKRGI 63
           + +  +   G  + G++  ++   +   L++Q + P+ +    + +A+ R          
Sbjct: 7   WRWHGITGDGNAQDGMLWAESRTLLLMALQQQMVTPLSLKRIAINSAQWRGD-------- 58

Query: 64  STPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLG 123
                A +  QLATL+++G+ L E L  +AEQ    + + +L ++   + +G   S++L 
Sbjct: 59  ---KSAEVIHQLATLLKAGLTLSEGLALLAEQHPSKQWQALLQSLAHDLEQGIAFSNALL 115

Query: 124 DYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFAVG 183
            +  VF  L+++M+  GE +G LD     LA     ++++  K++ A+ YP++++  A+ 
Sbjct: 116 PWSEVFPPLYQAMIRTGELTGKLDECCFELARQQRAQRQLTDKVKSALRYPIIILAMAIM 175

Query: 184 IVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYLVRWLL 243
           +V  +L  V+P+    +      LPA TQ ++  +DF   WG  L++  +ML    + L+
Sbjct: 176 VVVAMLHFVLPEFAAIYKTFNTPLPALTQGIMTLADFSGEWGWLLVLFGIMLTIANKLLM 235

Query: 244 TKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVMTNQF 303
            +P   +   + ++ +P++G + RG    +    L++  S+ I  L G+    + M   +
Sbjct: 236 RRPTWLIARQKLLLRIPIMGSLMRGQKLTQIFTILALTQSAGITFLQGVESVRETMRCPY 295

Query: 304 VKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAA-DNQDNS 362
             Q +     ++  G  +  AL+    F P+ L ++ +GE SG L+ ML   A  ++DN+
Sbjct: 296 WVQLLTQIQHDISNGHPIWLALKNAGEFSPLCLQLVRTGEASGSLDLMLDNIAHHHRDNT 355

Query: 363 FESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLMS 405
                N+A  +  PAL+ +  G++  +V+A  +PI  + + MS
Sbjct: 356 MALADNLA-ALLEPALLIITGGIIGTLVVAMYLPIFHLGDAMS 397