Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 401 a.a., protein transport protein HofC from Dickeya dianthicola ME23

 Score =  171 bits (432), Expect = 5e-47
 Identities = 113/405 (27%), Positives = 205/405 (50%), Gaps = 15/405 (3%)

Query: 4   FEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFKRGI 63
           + ++AL + G    G   G +  ++ Q L E    P+ +   Q    R       + RG 
Sbjct: 7   YYWQALRSDGEFCAGERIGTSRDEIYQYLLELGYQPLRLKTGQYLTPR-------YWRG- 58

Query: 64  STPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLG 123
             P L++I RQLATL+Q+G+PL + L  +  Q EK   R +L  +R +V +G  LS+ L 
Sbjct: 59  --PQLSVIIRQLATLLQAGLPLLDALDLLGRQHEKAGWRCLLQEIRLQVAQGRALSEVLT 116

Query: 124 DYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFAVG 183
           DYP VF  +  S+VA GE +G LD    RLA+Y EN++++  ++ +A+ YP  ++   + 
Sbjct: 117 DYPTVFPVMCSSLVAVGELTGKLDDCCARLANYQENQRQLTGQVMKALRYPAFVIAVGLL 176

Query: 184 IVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYLVRWLL 243
           +   +L  V+P+  G +      LP  T+ +L  SD L  +G +LLV L ++I L    +
Sbjct: 177 VALLMLTLVLPEFAGLYASFDAPLPWLTRTMLGLSDALSRYG-TLLVTLPVVIVLGYRQI 235

Query: 244 TKPDI--RLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVMTN 301
            +  +  + R  R ++ LP++  + RG   ++   TL++   + + +  G+  A   + N
Sbjct: 236 RRQKVEWQKREQRLLLKLPLLSTLVRGHCLSQIFHTLAMTQQAGLTLPSGLSAAA-ALNN 294

Query: 302 QFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIAS-GEQSGELEGMLTRAADNQD 360
              +Q ++     + +G  L +A+    L  P   H + S GE++G L+ +  R A   +
Sbjct: 295 PVYRQSLVEIKNQLEQGIPLGQAIHDNPLLYPAPCHQLVSVGEETGALDQLFARLAGWYE 354

Query: 361 NSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLMS 405
           N      +       P L+ ++ G+V  +V+A  +PI ++ N+++
Sbjct: 355 NHTRQFADTLTQTLEPLLLVIVGGLVGTLVIAMYLPIFQLGNVLA 399