Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 408 a.a., type II secretion system inner membrane protein GspF from Dickeya dadantii 3937

 Score =  429 bits (1103), Expect = e-125
 Identities = 221/407 (54%), Positives = 307/407 (75%), Gaps = 2/407 (0%)

Query: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFK 60
           MA F+Y+AL+A+G+  +G+ E D+AR  RQ L+E+ LVP+++ E + +         + +
Sbjct: 1   MALFQYQALNAQGKKSQGMQEADSARHARQLLREKGLVPVKIEEQRGEVTTRSGFSLSLR 60

Query: 61  RG--ISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTL 118
           R   IS  DLAL+TRQLATLV + +PLEE L AVA+QSEKP++  ++ AVRAKV EG++L
Sbjct: 61  RSHRISASDLALLTRQLATLVAAALPLEEALDAVAKQSEKPKLSALMAAVRAKVVEGHSL 120

Query: 119 SDSLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLV 178
           ++++G++P  F+ L+ +MVAAGE SGHLD+VL RLADY E RQ+MRS++QQAMIYP VL 
Sbjct: 121 AEAMGNFPGSFERLYCAMVAAGEASGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVLT 180

Query: 179 VFAVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYL 238
           + A+ +V+ LL+AVVPK+V QF+ M QALP ST+ L+  SD ++ +G  +++ L++ +  
Sbjct: 181 LVAISVVSILLSAVVPKVVEQFIHMKQALPLSTRLLMGVSDAVRAYGPWVVLLLVLAVMG 240

Query: 239 VRWLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDV 298
            R LL +   RL + RR++ LP+IG+IARGLNTAR+ARTLSI  SSA+P+L  MR++ DV
Sbjct: 241 FRVLLRQEKHRLVFHRRLLFLPLIGRIARGLNTARYARTLSILNSSAVPLLQAMRISGDV 300

Query: 299 MTNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADN 358
           +TN + + ++  A + VREG SL KALEQT LFPPMM HMIASGE+SGEL+GMLTRAADN
Sbjct: 301 LTNDYARFRLGQATDAVREGVSLHKALEQTSLFPPMMRHMIASGERSGELDGMLTRAADN 360

Query: 359 QDNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLMS 405
           QD  F + + +ALG+F P L+  MAG+VLFIV+A L PIL++N LMS
Sbjct: 361 QDREFSAQMTLALGLFEPLLVVSMAGIVLFIVLAILQPILQLNTLMS 407