Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 398 a.a., general secretory pathway component, cryptic from Escherichia coli BL21

 Score =  332 bits (850), Expect = 2e-95
 Identities = 178/403 (44%), Positives = 272/403 (67%), Gaps = 8/403 (1%)

Query: 4   FEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFKRGI 63
           + Y+A+   G+  +G+I+ ++ RQ R RL+E+ L  +++   +    ++R      +  I
Sbjct: 3   YRYRAMTQDGQKLQGIIDANDERQARLRLREEGLFLLDIRPQKSSGVKTR------RPRI 56

Query: 64  STPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLG 123
           S  +L L TRQLATL  + +PLEE L  + +QS   R+  +L  VR+ + EG+ LSD+L 
Sbjct: 57  SHSELTLFTRQLATLSAAALPLEESLAVIGQQSSNKRLGDVLNQVRSAILEGHPLSDALQ 116

Query: 124 DYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFAVG 183
            +P +FD L+R++V AGEKSG L  VLE+LADY ENRQK+RSKL Q++IYP +L   A+G
Sbjct: 117 HFPTLFDSLYRTLVKAGEKSGLLAPVLEKLADYNENRQKIRSKLIQSLIYPCMLTTVAIG 176

Query: 184 IVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYLVRWL- 242
           +V  LL AVVPKI  QFV M Q LP ST+ LL  SD LQ  G +LL   + ++ +  WL 
Sbjct: 177 VVIILLTAVVPKITEQFVHMKQQLPLSTRILLGLSDTLQRTGPTLLA-TVFIVAVGFWLW 235

Query: 243 LTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVMTNQ 302
           L + + R R+   ++ + +IG +   +N+AR+ RTLSI  SS +P+LDGM ++ + + N 
Sbjct: 236 LKRGNNRHRFHAMLLRVALIGPLICAINSARYLRTLSILQSSGVPLLDGMNLSTESLNNL 295

Query: 303 FVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQDNS 362
            ++Q++  AAENVR+G+S+  +LEQT +FPPMML+M+ASGE+SG+L  ++ RAADNQ+  
Sbjct: 296 EIRQRLANAAENVRQGNSIHLSLEQTAIFPPMMLYMVASGEKSGQLGTLMVRAADNQETL 355

Query: 363 FESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLMS 405
            ++ + + L IF PALI  MA +VLFIV++ L P+L++N++++
Sbjct: 356 QQNRIALTLSIFEPALIITMALIVLFIVVSVLQPLLQLNSMIN 398