Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 407 a.a., putative type II secretion protein GspF from Escherichia coli BL21

 Score =  441 bits (1134), Expect = e-128
 Identities = 230/407 (56%), Positives = 313/407 (76%), Gaps = 5/407 (1%)

Query: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARS---RSQGF 57
           MA F Y+AL+  GR  KG+IE D+AR  RQ L+ + L+P+ + E ++ A+     + +  
Sbjct: 1   MALFYYQALERNGRKTKGMIEADSARHARQLLRGKDLIPVHI-EARMNASAGGMLQRRRH 59

Query: 58  AFKRGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYT 117
           A +R ++  DLAL TRQLATLVQ+ MPLE CL+AV+EQSEK  ++++ +A+R+++ EGYT
Sbjct: 60  AHRR-VAAADLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYT 118

Query: 118 LSDSLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVL 177
           LSDSL ++P VFD LF SMVAAGEKSGHLD VL RLADY E RQ+++S+L QAM+YP+VL
Sbjct: 119 LSDSLREHPRVFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVL 178

Query: 178 VVFAVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIY 237
           +V A G+V  LL AVVPKI+ QF  +G ALPAST+ L+  SD LQ  G+  L GLL L+ 
Sbjct: 179 LVVATGVVTILLTAVVPKIIEQFDHLGHALPASTRTLIAMSDALQASGVYWLAGLLGLLV 238

Query: 238 LVRWLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVD 297
           L + LL  P +RLRWD+ ++ LPV G++ARGLNTARF+RTLSI T+S++P+L+G++ A  
Sbjct: 239 LGQRLLKNPAMRLRWDKTLLRLPVTGRVARGLNTARFSRTLSILTASSVPLLEGIQTAAA 298

Query: 298 VMTNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAAD 357
           V  N++V+QQ+L AA+ VREGSSLR AL + +LFPPMML+MIASGEQSGELE ML +AA 
Sbjct: 299 VSANRYVEQQLLLAADRVREGSSLRAALAELRLFPPMMLYMIASGEQSGELETMLEQAAV 358

Query: 358 NQDNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLM 404
           NQ+  F++ V +ALG+F PAL+ +MAG+VLFIV+A L P+L++NN++
Sbjct: 359 NQEREFDTQVGLALGLFEPALVVMMAGVVLFIVIAILEPMLQLNNMV 405