Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 393 a.a., hypothetical protein from Azospirillum sp. SherDot2

 Score = 66.6 bits (161), Expect = 1e-15
 Identities = 98/421 (23%), Positives = 180/421 (42%), Gaps = 46/421 (10%)

Query: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFK 60
           MA FE + L A GR +   +E  + R+ R  +  +          +V + R R +   + 
Sbjct: 1   MAWFEVRLL-AGGRARSIEVEAADERRARDAISGRG---------RVLSVRRRLKVGGWG 50

Query: 61  RGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSD 120
           R +   +  ++  +LA ++ S + L E LR +A  + + RIR     +   V  G  L+D
Sbjct: 51  RPLDRNERHILFIRLAAMLDSRVGLAEALRRIAA-AFRGRIRRTAERMADAVELGDDLAD 109

Query: 121 SLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADY----AENRQKMRSKLQQAMIYPVV 176
           ++   P  F  +  ++V AG       + L   A++    A  RQ  RS L  A++Y V 
Sbjct: 110 AMLRQPRSFPPVLVALVRAGGFGEGTPAALRTAAEFERQLAGARQGFRSGLALAVLYVVT 169

Query: 177 LVVFAVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLI 236
             V  VG  +F+L  ++ +    F + G+ +     +LL           +L  GL+ ++
Sbjct: 170 AGVVMVG-TSFVLTPLLLE-TEVFRRAGEEVNVDWVYLLS----------NLTTGLVAIV 217

Query: 237 YLVRWLL---------TKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIP 287
                +L           P+   R DR V+ +P+   IA G+      R LS+  +  +P
Sbjct: 218 LAALAVLGGLATAGRRAAPE---RVDRLVMRIPLYRDIALGIQHHVIFRELSLLVAGGVP 274

Query: 288 ILDGMRVAVDVMTNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGE 347
           I   +R+  D      +   ++ A   V  G     A+   +  P      IA+ E   E
Sbjct: 275 IDRALRLTADGAPAGALAADLIDATRAVAAGLPWTDAM---RALPGTDRASIAAAENRVE 331

Query: 348 LEGMLTRAADNQDNSFESTVNIALGIF--TPALIALMAGMVLFIVMATLMPILEMNNLMS 405
           L   L+  A+   + +   V +A  +      ++  +AG+V+F +  T++PIL++   ++
Sbjct: 332 LAQSLSALAEQYRDLYLHAVAVAEPVLRGLSVVVVGVAGIVMFGL--TIVPILQLAEHIA 389

Query: 406 R 406
           R
Sbjct: 390 R 390