Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 408 a.a., General secretion pathway protein F from Alteromonas macleodii MIT1002

 Score =  473 bits (1217), Expect = e-138
 Identities = 238/408 (58%), Positives = 326/408 (79%), Gaps = 4/408 (0%)

Query: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAF- 59
           MAAF +KA++A+G++  GV+EGDNARQVRQ+L+E+ L+P+EV E   + A+S  +G +F 
Sbjct: 1   MAAFAFKAVNARGKNTNGVLEGDNARQVRQQLREKGLIPLEV-EQVAERAQSEGKGLSFS 59

Query: 60  --KRGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYT 117
             K  IS  DLAL+TRQLATLV+S +P+EE L AVAEQ EK R + M++AVR+KV EG+ 
Sbjct: 60  LFKPRISASDLALLTRQLATLVESALPVEEALLAVAEQCEKNRQKNMMMAVRSKVVEGHG 119

Query: 118 LSDSLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVL 177
           L+D+LG +P VFDEL+R+MVAAGEKSGHLD+VL RLADY E RQ+ RS++ QAMIYP ++
Sbjct: 120 LADALGQFPSVFDELYRAMVAAGEKSGHLDTVLNRLADYTERRQQTRSQITQAMIYPSLM 179

Query: 178 VVFAVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIY 237
           + FA+GIV  LL  VVPKIVGQF  MGQ LPA TQFL+  S +LQ++G+ +L+G+ +L+ 
Sbjct: 180 LFFAMGIVLLLLTVVVPKIVGQFDHMGQDLPAITQFLISVSTWLQNYGLFMLIGIAVLVV 239

Query: 238 LVRWLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVD 297
           +++ +L +  ++LR+ R +++LP+IG+++RGLNTARFARTLSI ++SA+P+L+ MR++ D
Sbjct: 240 IIQRVLQQKHMKLRYHRALLTLPLIGRVSRGLNTARFARTLSILSASAVPLLEAMRISGD 299

Query: 298 VMTNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAAD 357
           V+ NQ +K QV  AA NV+EGSSLR AL+ TK+FPPMM+HMIASGE+SGEL+ ML RAAD
Sbjct: 300 VLENQHIKNQVADAAINVKEGSSLRAALDNTKMFPPMMMHMIASGEKSGELQQMLARAAD 359

Query: 358 NQDNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLMS 405
           NQD  FE+ + ++L +F P LI  MAG+VLFIVMA L PIL +NN+++
Sbjct: 360 NQDREFEALIGVSLKVFEPLLIVSMAGIVLFIVMAILQPILALNNMVN 407