Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 401 a.a., General secretion pathway protein F from Alteromonas macleodii MIT1002

 Score =  202 bits (514), Expect = 1e-56
 Identities = 116/402 (28%), Positives = 222/402 (55%), Gaps = 8/402 (1%)

Query: 4   FEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFKRGI 63
           FE++  D +G  +KG I   +  + +  L+ Q +    V     K ++S    F  ++ I
Sbjct: 7   FEWQGKDRQGLSRKGEISAASLSEAKNLLRRQGISANRVK----KPSKSL---FRREKKI 59

Query: 64  STPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSDSLG 123
           +  D+++I+RQ+AT++ +G+ L + L  +++      +R +L  +  +V  G  LS +L 
Sbjct: 60  TPADISVISRQIATMLAAGVTLIQSLEMISQGHANSSMRKLLGEITDEVKAGNPLSSALR 119

Query: 124 DYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVFAVG 183
            +P  FD+L+  +V  GE+SG L+++ +R+A Y E  + ++SK+++AM YP+ ++V A  
Sbjct: 120 KHPLYFDDLYCDLVYTGEQSGALETIYDRIATYKEKAEALKSKIKKAMFYPIAVLVVAFI 179

Query: 184 IVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIYL-VRWL 242
           +   LL  VVP+    F   G  LPA TQF+L  S F+Q +GI + +G+    ++ +R  
Sbjct: 180 VTTILLIFVVPQFEEIFSSFGAELPAFTQFVLAISRFVQDYGIFIAIGIGGAGFMFMRTY 239

Query: 243 LTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVMTNQ 302
                +R   DR ++ +PVIG+I +  + ARF RTL+   ++ +P++  +  A     N 
Sbjct: 240 KRSQKLRDTVDRNILKIPVIGEILKKASIARFTRTLATTFAAGVPLIGALESAAGASGNA 299

Query: 303 FVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQDNS 362
             +  +L   + V  G  +  A+  T++FP M+  MIA GE+SG ++ ML++ A   +  
Sbjct: 300 VYRDAILYMRKEVAGGMPMHVAMRATQVFPDMVTQMIAIGEESGAVDEMLSKIATIYEAE 359

Query: 363 FESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLM 404
            +  V+    +  P ++A++  ++  +++A  +PI +M N++
Sbjct: 360 VDDMVDGLTSLLEPMIMAVLGVVIGGLIVAMYLPIFQMGNVV 401