Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 411 a.a., General secretion pathway protein F from Alteromonas macleodii MIT1002

 Score =  203 bits (517), Expect = 7e-57
 Identities = 112/405 (27%), Positives = 219/405 (54%), Gaps = 6/405 (1%)

Query: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGF--- 57
           M  F+Y     +G  +KG+IE  +A+   Q L  Q++VP+ +VE++ ++A +   GF   
Sbjct: 1   MPQFKYAGKSTQGGPQKGIIEAASAQAAAQALLSQNIVPLTIVESKKRSAENEGDGFDIT 60

Query: 58  -AFKRGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGY 116
             F++ +   ++ + +RQ+ +L+++G+P+   ++ ++E +   R + +L  +  ++ +G 
Sbjct: 61  RLFQQKVGLDEMIIFSRQMYSLLKAGIPIIRAIKGLSENASHKRFQEILKDIADQLEQGR 120

Query: 117 TLSDSLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVV 176
           +LS S+  Y  VF  L  S+V  GE +G LD V  +LA Y E  Q+ R +++ A+ YP  
Sbjct: 121 SLSSSMAKYEKVFTRLTISVVVVGENTGKLDDVFLQLALYFEREQETRRRIKSALRYPT- 179

Query: 177 LVVFAVGIVAFLLAA-VVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLML 235
            V+ A+ I  F+L   VVP     F +    LP  T+ L+  S+F  ++   L+  ++  
Sbjct: 180 FVLIALAIAMFILNLFVVPVFTQMFERFDTELPIMTRVLIGTSNFFVNYWWLLIFVIVGG 239

Query: 236 IYLVRWLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVA 295
           I+ V+  +   + RL+WD+  + LP++G I      +R++R+ S+   + +P+  G+ + 
Sbjct: 240 IFAVKQYVNSTNGRLKWDKFKLKLPIVGSIIERSLLSRYSRSFSMILRAGVPLTAGLSLT 299

Query: 296 VDVMTNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRA 355
            D + N  +++++    + + +G SL +  + ++LF  ++L MIA GE++G LE +L  +
Sbjct: 300 ADAVDNAHMRKRIKEMRQGIEKGESLLRVSKNSELFSTLVLQMIAVGEETGRLEPLLEES 359

Query: 356 ADNQDNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEM 400
           AD  +   +  +        P LI  +A MVL + +    P+  M
Sbjct: 360 ADYYEREVDFDLKSLTAKIEPILIGFVAVMVLILALGIFTPMWNM 404