Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 401 a.a., Type II secretion system protein F from Acinetobacter radioresistens SK82

 Score =  337 bits (865), Expect = 3e-97
 Identities = 175/405 (43%), Positives = 277/405 (68%), Gaps = 5/405 (1%)

Query: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFK 60
           M A+++ A+DA G+ +KG++EGD+ARQ+RQ+L++++ +P+ V   + K  + +++ +  K
Sbjct: 1   MPAYQFTAMDASGKQQKGILEGDSARQIRQQLRDKTWIPVSVEPVENKE-KGQTRSWR-K 58

Query: 61  RGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSD 120
           +G++  DLAL+TRQL+ LV + +PLEE +RAV +QSEK  ++ +L++VR+KV EG++L+ 
Sbjct: 59  KGLNAYDLALMTRQLSVLVAAAIPLEEAIRAVGKQSEKVHVQNLLMSVRSKVLEGHSLAQ 118

Query: 121 SLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVF 180
           ++      F +L+ + +AAGE+SGHLD +L++LADY ENR  M+ K+Q AM+YP++L++ 
Sbjct: 119 AIQQSGR-FPDLYIATIAAGERSGHLDLILDQLADYTENRFAMQKKIQGAMVYPIILMLM 177

Query: 181 AVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFL-QHWGISLLVGLLMLIYLV 239
           +  IV  L+  VVP IV  F Q  QALPA T  L+  SDF+ Q W   L++ ++ ++ L+
Sbjct: 178 SFAIVMGLMTYVVPDIVKTFDQSKQALPAITVILMKTSDFIRQAWPFLLVISVVGIMLLI 237

Query: 240 RWLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVM 299
           R+L T       +DR V+ LP+ GK+ARG+N ARFA TLSI T S +P++D +++   V 
Sbjct: 238 RFLKTSAG-HYTFDRFVLKLPLFGKLARGINAARFASTLSILTRSGVPLVDALKIGAAVS 296

Query: 300 TNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQ 359
            N  ++  V  AAE V EG +L   LE+   FPPMM+ MI SGE SGEL+ ML RA+  Q
Sbjct: 297 NNWVIRDSVNLAAEKVTEGGNLATQLERAGYFPPMMVQMIRSGEASGELDRMLERASTMQ 356

Query: 360 DNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLM 404
           D    + ++  L +  P ++ +MAG+VL IV+A ++PI+ MNN++
Sbjct: 357 DREVATFISTLLALLEPLMLVVMAGIVLVIVIAVMLPIVNMNNMV 401