Pairwise Alignments

Query, 406 a.a., type II secretion system protein GspF from Vibrio cholerae E7946 ATCC 55056

Subject, 408 a.a., Type II secretion system protein F from Acinetobacter radioresistens SK82

 Score =  225 bits (574), Expect = 2e-63
 Identities = 126/405 (31%), Positives = 226/405 (55%), Gaps = 6/405 (1%)

Query: 1   MAAFEYKALDAKGRHKKGVIEGDNARQVRQRLKEQSLVPMEVVETQVKAARSRSQGFAFK 60
           M  F Y  +D KG   KG +   N    +  L++Q +     ++T  +  R+  +G   K
Sbjct: 9   MPTFAYDGVDRKGIKVKGELTAKNMALAKVTLRKQGIT----IKTIREKRRNILEGLMKK 64

Query: 61  RGISTPDLALITRQLATLVQSGMPLEECLRAVAEQSEKPRIRTMLVAVRAKVTEGYTLSD 120
           R +ST D+ + TRQLAT++++G+PL +    VAE  E P +R +++ ++A+V  G T + 
Sbjct: 65  R-VSTLDITIFTRQLATMMKAGVPLVQGFEIVAEGLENPAMREVVLGIKAEVEGGNTFAG 123

Query: 121 SLGDYPHVFDELFRSMVAAGEKSGHLDSVLERLADYAENRQKMRSKLQQAMIYPVVLVVF 180
           +L  YP  FD LF S+V +GE+SG L+++L+R+A Y E  + ++ K+++AM YP  ++V 
Sbjct: 124 ALRKYPQYFDNLFCSLVESGEQSGALETMLDRVAIYKEKSELLKQKIKKAMKYPATVIVV 183

Query: 181 AVGIVAFLLAAVVPKIVGQFVQMGQALPASTQFLLDASDFLQHWGISLLVGLLMLIY-LV 239
           AV +   L+  VVP     F   G  LPA TQ +++ S+++Q +   L++ +  LI+  +
Sbjct: 184 AVIVTIILMVKVVPVFQDLFSSFGADLPAFTQMVVNMSNWMQKYWFILIIAIAALIFGFL 243

Query: 240 RWLLTKPDIRLRWDRRVISLPVIGKIARGLNTARFARTLSICTSSAIPILDGMRVAVDVM 299
                    R   DR  + LP+ G +      AR++RTL+   ++ +P++D +       
Sbjct: 244 EAKKRSQKFRDALDRMALKLPIFGDLVYKAIIARYSRTLATTFAAGVPLIDALESTAGAT 303

Query: 300 TNQFVKQQVLAAAENVREGSSLRKALEQTKLFPPMMLHMIASGEQSGELEGMLTRAADNQ 359
            N   +Q V+   E+V  G  L+ A+  +  FPPM + M+A GE+SG L+ ML + A + 
Sbjct: 304 NNVIYEQAVMKIREDVATGQQLQFAMRASNRFPPMAVQMVAIGEESGALDAMLDKVATHF 363

Query: 360 DNSFESTVNIALGIFTPALIALMAGMVLFIVMATLMPILEMNNLM 404
           +N  ++ V+    +  P ++A++  +V  +V+A  +PI +M +++
Sbjct: 364 ENEVDNAVDGLTSMMEPLIMAILGVLVGGLVIAMYLPIFQMGSVV 408