Pairwise Alignments

Query, 194 a.a., type II secretion system protein H from Vibrio cholerae E7946 ATCC 55056

Subject, 179 a.a., type II secretion system minor pseudopilin GspH from Dickeya dianthicola 67-19

 Score = 55.1 bits (131), Expect = 7e-13
 Identities = 44/169 (26%), Positives = 71/169 (42%), Gaps = 29/169 (17%)

Query: 5   RGFTLLEILLVLVLVSASAVAVIATFPVSVKDEAKISAQSFYQRLLLLNEEAILSGQDFG 64
           RGFTLLEI+LV++L   +A  V+   P   + ++      F  +L    E + ++    G
Sbjct: 4   RGFTLLEIMLVVLLAGVAATLVMMAIPAPKQQDSGWQIARFKAQLQYAVEGSQMNDHILG 63

Query: 65  VRIDVDTRRLTFLQLTADKG-----------WQKWQNDKMTNQTTLKEGLQLDFELGGGA 113
           + I     +   LQ    +            W  WQ  +M++ + L EG Q++     GA
Sbjct: 64  IYIQPRRWQYALLQRQVVENSPEDQQRLRYVWVPWQPYRMSSPSELPEGFQIELSTQVGA 123

Query: 114 WQKDDRLFNPGSLFDEEMFADEKKEQKQEPAPQLFVLSSGEVTPFTLSI 162
              D   F+PG+                   P + +L  GEVTPF L++
Sbjct: 124 -AGDGAGFSPGN-----------------GDPHILILPGGEVTPFRLTL 154