Pairwise Alignments

Query, 194 a.a., type II secretion system protein H from Vibrio cholerae E7946 ATCC 55056

Subject, 179 a.a., type II secretion system minor pseudopilin GspH from Dickeya dadantii 3937

 Score = 55.5 bits (132), Expect = 6e-13
 Identities = 43/169 (25%), Positives = 72/169 (42%), Gaps = 29/169 (17%)

Query: 5   RGFTLLEILLVLVLVSASAVAVIATFPVSVKDEAKISAQSFYQRLLLLNEEAILSGQDFG 64
           RGFTLLEI+LV++L   +A  V+   P   + ++      F  +L    E++ ++    G
Sbjct: 4   RGFTLLEIMLVVLLAGVAATLVMMAIPAPKQQDSGWQIARFKAQLQYAVEDSQMNDHILG 63

Query: 65  VRIDVDTRRLTFLQLTADKG-----------WQKWQNDKMTNQTTLKEGLQLDFELGGGA 113
           + I     +   LQ    +            W  WQ  +M++ + L +G Q++     GA
Sbjct: 64  IYIQPRRWQYALLQRQVVENSPDDQQRLRYVWVPWQPYRMSSPSELPDGFQIELSTQVGA 123

Query: 114 WQKDDRLFNPGSLFDEEMFADEKKEQKQEPAPQLFVLSSGEVTPFTLSI 162
              D   F+PG+                   P + +L  GEVTPF L++
Sbjct: 124 -AGDGAGFSPGN-----------------GDPHILILPGGEVTPFRLTL 154