Pairwise Alignments

Query, 194 a.a., type II secretion system protein H from Vibrio cholerae E7946 ATCC 55056

Subject, 187 a.a., putative type II secretion protein GspH from Escherichia coli BL21

 Score = 74.7 bits (182), Expect = 9e-19
 Identities = 55/184 (29%), Positives = 89/184 (48%), Gaps = 11/184 (5%)

Query: 5   RGFTLLEILLVLVLVSASAVAVIATFPVSVKDEAKISAQSFYQRLLLLNEEAILSGQDFG 64
           RGFTLLEI+LV+ L+  ++  V+ TF    +  AK +AQ F  R     + A++ GQ  G
Sbjct: 4   RGFTLLEIMLVIFLIGLASAGVVQTFATDSESPAKKAAQDFLTRFAQFKDRAVIEGQTLG 63

Query: 65  VRIDVDTRRLTFLQLTADKGWQKWQNDKMTNQTTLKEGLQLDFELGGGAWQKDDRL---F 121
           V ID    +  F+Q    + W      +++ Q T+ + +Q+  + G   WQK+  L    
Sbjct: 64  VLIDPPGYQ--FMQRRQGQ-WLPVSATRLSAQVTVPKQVQMLLQPGSDIWQKEYALELQR 120

Query: 122 NPGSLFDEEMFADEKKEQKQEPAPQLFVLSSGEVTPFTLSIFPKGQEPDEQWRVTAQENG 181
              +L D E+   E +++ ++  PQ+        TPFTL  +   Q  +  W V    +G
Sbjct: 121 RRLTLHDIEL---ELQKEAKKKTPQIRFSPFEPATPFTLRFYSAAQ--NACWAVKLAHDG 175

Query: 182 TLRL 185
            L L
Sbjct: 176 ALSL 179