Pairwise Alignments

Query, 336 a.a., type II secretion system protein K from Vibrio cholerae E7946 ATCC 55056

Subject, 328 a.a., type II secretion system minor pseudopilin GspK from Pectobacterium carotovorum WPP14

 Score =  192 bits (487), Expect = 1e-53
 Identities = 120/327 (36%), Positives = 190/327 (58%), Gaps = 7/327 (2%)

Query: 1   MRAKQRGVALIVILLLLAVMVSIAATMAERLFSQFQRATHQLNYQQAYWYSLGVEALAKK 60
           MR++QRG AL+V+LL+LA+MV+IAA + ER    F R    L+ QQA WY+LG E L+ +
Sbjct: 1   MRSRQRGAALLVVLLILALMVTIAAVITERTGKAFLRTESHLSRQQAKWYALGAETLSGQ 60

Query: 61  GIEQSYQDSETINLS-QPWALKEQTYPLDYGQVRGKIRDMQACFNLNAL-AGVKLTPDSV 118
            +++  +       + Q W+     +P+D G++ G+I D + CFN+NA+  GV      V
Sbjct: 61  ILQRDARGMPGRTFAGQNWSQPGHRFPVDGGEITGQISDARTCFNVNAINQGVDNESTLV 120

Query: 119 KKPYLLTVLQALLEGLEVESYQAEVIADSTLEFIDKDDSVRTAYGVEDSYYESMIPAYMA 178
           K PY   V + LL+ L  E+ +AE I  +  ++ID D+   +A G ED  Y ++   Y  
Sbjct: 121 KTPYPAQVFRLLLKNLGEETDRAEKITAAVRDWIDADN-YPSANGAEDDVYATLPVPYRT 179

Query: 179 ADTWLADASEWRAVQQVGGETMNKALPYVCALPTDQWRLNVNTLPAEQAALLAAMFSPTL 238
           A+  +++ SE RAV  +  +   + LPYVCALP D   +N+NTL    A LL+A+F   +
Sbjct: 180 ANQRMSEISELRAVYGMDSDLYRRLLPYVCALPVDAMSININTLTEFDAPLLSAVFLNEM 239

Query: 239 SPESAKTLLEGRPFDGWASVDDFLAQSALTGVDNAVREEAKKYLSVDSHYFELDAQVLVD 298
           +   AK L++ RP  GWAS+ + L Q+ L   ++  +  A++ L+V S +F +  QV V 
Sbjct: 240 TMSQAKALVQQRPRMGWASL-EVLQQTGLLPPNS--KNTAQRVLAVKSEWFFVKLQVRVG 296

Query: 299 TSRVRIRSLFYSNDKKTATVIRRRFGG 325
            S    RSL + + +K   V++R++GG
Sbjct: 297 DSDFHQRSLLHLSGQK-IEVVQRQYGG 322