Pairwise Alignments

Query, 336 a.a., type II secretion system protein K from Vibrio cholerae E7946 ATCC 55056

Subject, 299 a.a., type II secretion system protein GspK from Erwinia tracheiphila SCR3

 Score = 58.2 bits (139), Expect = 3e-13
 Identities = 63/257 (24%), Positives = 107/257 (41%), Gaps = 33/257 (12%)

Query: 3   AKQRGVALIVILLLLAVMVSIAATMAERLFSQFQRATHQLNYQQAYWYSLGVEALAKKGI 62
           A +RG+ L+++LL++++++ + A+++    +  Q  +      QA W  LG EA     +
Sbjct: 7   AGERGMILLMVLLVISLIMVMIASLSRTGQTTRQSVSSAQQRLQAKWQLLGAEAAVAAEL 66

Query: 63  EQSYQDSETINLSQPWALKEQTYPLDYGQVRGKIRDMQACFNLNALAGVKLTPDSVKKPY 122
           +     +  I       L+ ++  +  G VR  +RD+ ACFNLN L        SVKK  
Sbjct: 67  KLQLDGNGGILPDAASWLRSRSVRVSGGDVRYVLRDLGACFNLNWLLA------SVKKGQ 120

Query: 123 LLTVLQALLEGLEVESYQAEVIADSTLEFIDKDDSVRTAYGVEDSY--YESMIPAYMAAD 180
                         E  Q  ++ D+  + +     VR   G   S      M+  Y+   
Sbjct: 121 --------------EGNQDILMPDAWFQQL----LVRIGAGQSLSVQRLRDMLQGYL--- 159

Query: 181 TWLADASEWRAVQQVGGETMNKALPYVCALP--TDQWRLNVNTLPAEQAALLAAMFSPTL 238
               D S+  AV  +      + L  +C +    +  +LNVN L ++Q  LL A     +
Sbjct: 160 --FRDDSQLLAVAVIPPAPWQRLLGQICVVSGLAENPKLNVNGLTSDQLPLLQAALKKPV 217

Query: 239 SPESAKTLLEGRPFDGW 255
                + LL  RP  GW
Sbjct: 218 DDGRLRQLLASRPDKGW 234