Pairwise Alignments

Query, 336 a.a., type II secretion system protein K from Vibrio cholerae E7946 ATCC 55056

Subject, 349 a.a., type II secretion system minor pseudopilin GspK from Dickeya dadantii 3937

 Score =  188 bits (478), Expect = 2e-52
 Identities = 123/353 (34%), Positives = 189/353 (53%), Gaps = 38/353 (10%)

Query: 1   MRAKQRGVALIVILLLLAVMVSIAATMAERLFSQFQRATHQLNYQQAYWYSLGVEALAKK 60
           M  +QRGVAL++++L+L++MV+IAA++ ER    +QR ++ LN  QA WY+LG EAL   
Sbjct: 1   MSRRQRGVALLIVMLMLSLMVTIAASITERSGKAWQRTSNLLNRTQARWYALGAEALISS 60

Query: 61  GIEQSYQDS-ETINLSQPWALKEQTYPLDYGQVRGKIRDMQACFNLNALAGVKLTP---- 115
            +++  Q S E+  + QPW+  +     D  ++R ++ D QAC NLNAL+  K       
Sbjct: 61  VLQRDAQASPESTFIGQPWSKVDHQMMADGSEIRAQVLDGQACLNLNALSPAKKPAPGNN 120

Query: 116 -----------------------DSVKKPYLLTVLQALLEGLEVESYQAEVIADSTLEFI 152
                                  +  + PY   V + LL  L  +  QAE + D+  ++I
Sbjct: 121 NTSGNAGNSNTDTNNQSPPAKGGNPEQGPYAAQVFRQLLMVLGEDPKQAERVTDAVRDWI 180

Query: 153 DKDDSVRTAYGVEDSYYESMIPAYMAADTWLADASEWRAVQQVGGETMNKALPYVCALPT 212
           D +DS     G ED  Y +  P        + D +E RAV  V      + LPYVC LP 
Sbjct: 181 D-EDSEPLMNGAEDDSYVNFHPGNQR----MTDVTELRAVMGVDAALYRRLLPYVCVLPV 235

Query: 213 DQWRLNVNTLPAEQAALLAAMFSPTLSPESAKTLLEGRPFDGWASVDDFLAQSALTGVDN 272
           D+  +NVNTL  E A LL+A+F   +S E+A+ +L+ RP  GW +++DF+  SAL   +N
Sbjct: 236 DKLVINVNTLTPESAPLLSALFMGEMSAEAAERVLQQRPPQGWRNLNDFMGLSALP--EN 293

Query: 273 AVREEAKKYLSVDSHYFELDAQVLVDTSRVRIRSLFYSNDKKTATVIRRRFGG 325
           A +   ++ L++ S +F  D Q+ VD S    RSLF+    K   V++R++GG
Sbjct: 294 A-KTGVRQVLAIKSDWFFADIQIRVDDSEFYQRSLFHRG--KQIEVVQRQYGG 343