Pairwise Alignments

Query, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

Subject, 774 a.a., RNA-binding transcriptional accessory protein from Rhodanobacter sp. FW510-T8

 Score =  900 bits (2327), Expect = 0.0
 Identities = 475/776 (61%), Positives = 591/776 (76%), Gaps = 11/776 (1%)

Query: 4   AICHQIAQELNVRPEQVIAAVTLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLAYLR 63
           +I  +IA ++  + EQV AA+ L+D G TVPFIARYRKEVTGGLDDTQLR L+ RL YLR
Sbjct: 3   SIEQRIANDIAAKTEQVRAAIGLLDGGATVPFIARYRKEVTGGLDDTQLRLLEERLRYLR 62

Query: 64  EMDDRRQTILKSIQEQGKLTPELEQAILSADSKNRLEDLYLPYKPKRRTKGQIAIEAGLE 123
           E+++RR  IL S++EQGKL   L+  +L+AD+K RLEDLYLPYKPKRRTK QIA EAGLE
Sbjct: 63  ELEERRAAILASVEEQGKLGDALKADLLAADTKARLEDLYLPYKPKRRTKAQIAREAGLE 122

Query: 124 PLADTLWTQPNTDPESEAAKYINAEKGVADSKAALDGARAIVMERIAEDANLLEKIRQHL 183
           PLA  L   P   PE+ A  +++A+KGVAD +AALDGARAI+ME IAEDA+L+ ++R  L
Sbjct: 123 PLALGLREDPTRAPETFAEAFVDADKGVADVRAALDGARAILMEAIAEDAHLVGELRDWL 182

Query: 184 NRNAEIVSRVIEGKEQAGEKFKDYFDHREPISKAPSHRALAMLRGRNEGFLTLTLNADPE 243
               +I ++V+EGKE  G KF+DYFDH EPI+K PSHR LA++R RNEG + L L    +
Sbjct: 183 WAQGQIRAKVVEGKESEGAKFRDYFDHVEPIAKIPSHRLLALMRARNEGVIELELAPAAD 242

Query: 244 LEESARQSYCETLIAEHYGIHLSQATADAWRKQVISWAWKIKISMHMETELMSAMKERAE 303
            E+   +   E  +A H GI      ADAW ++ +   W++K+ +H+  +L   ++E AE
Sbjct: 243 SEQGHAEG--EGRVAAHAGILDRGRAADAWLREAVRLTWRVKLHLHLTLDLFGRVREGAE 300

Query: 304 IEAIEVFATNLKDLLMAAPAGPRATLGLDPGLRTGCKVAVVDATGKVLATDTIYPHAPQH 363
            EAI VF  NLKDL++AAPAG +  +GLDPG+RTGCKVAVVDATGK+LATDTIYPH P+ 
Sbjct: 301 DEAIRVFGDNLKDLMLAAPAGAKTVMGLDPGIRTGCKVAVVDATGKLLATDTIYPHEPRR 360

Query: 364 QYDRAMQSIALLVKKFNVDLIAIGNGTASRETDAFAADLIKR-GNLKVQKIMVSEAGASV 422
           Q++ ++ S+A L ++  VDLIAIGNGTASRETD  A +LIK+  + K+ KI+VSEAGASV
Sbjct: 361 QWNESLVSLAKLCRQHGVDLIAIGNGTASRETDKLAGELIKKLPDAKLSKIVVSEAGASV 420

Query: 423 YSASELAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTLLAKR 482
           YSASE AAKEFP LDVSLRGAVSIARRLQDPLAELVKI+PK+IGVGQYQHDV+Q  LA+ 
Sbjct: 421 YSASETAAKEFPALDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVNQVKLARA 480

Query: 483 LDAIVEDCVNAVGVDVNTASAALLTRVAGLSAALAQNIVDYRDENGRFESRSALKKVPRL 542
           LDA VEDCVNAVGVDVNTASAALL+RVAGLS+++A+N+V +RD NG F +R AL KVPRL
Sbjct: 481 LDAKVEDCVNAVGVDVNTASAALLSRVAGLSSSVAENVVKHRDANGPFPNRKALLKVPRL 540

Query: 543 GPKAFEQCAGFLRIMDGKNPLDASAVHPEAYPVVKTIAEKNSKDLKALIGNTEFLRTLRA 602
           G KAFEQCAGFLR+ +G NPLDASAVHPEAYPVV+ I  +  ++++ +IG++ FLR LR 
Sbjct: 541 GDKAFEQCAGFLRVPNGDNPLDASAVHPEAYPVVERIIAQCGREVRHIIGDSGFLRGLRP 600

Query: 603 VDYTDENFGVPTVTDIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVSNVA 662
             +TD+ FGVPTV DI+KEL+KPGRDPRP F   +FAEG+ +V DL+ GM+LEG V+NVA
Sbjct: 601 EQFTDDKFGVPTVRDILKELEKPGRDPRPAFVAPSFAEGVEDVKDLKPGMILEGRVTNVA 660

Query: 663 NFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSMRLN 722
            FGAFVDIGVHQDGLVH+SAL+  F+ DPR+ VKAGDIVKVKVMEVD+ R+RI LSMRL+
Sbjct: 661 AFGAFVDIGVHQDGLVHVSALSHTFVKDPRDAVKAGDIVKVKVMEVDLPRQRIGLSMRLD 720

Query: 723 DEPGQDNRSQRSAAPRSGQER--RAPRRDEPQGNALGGA---MGGAFAAAFAKAKK 773
           DEPG+    +  +    G +R  R PR   P G A   A      AFA A  +A K
Sbjct: 721 DEPGRARGGRPGSGDAHGGQRDGRGPR---PGGTAPKPAPIPANSAFADALTRAIK 773