Pairwise Alignments

Query, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

Subject, 776 a.a., RNA-binding transcriptional accessory protein from Rhodanobacter sp000427505 FW510-R12

 Score =  907 bits (2343), Expect = 0.0
 Identities = 475/778 (61%), Positives = 592/778 (76%), Gaps = 13/778 (1%)

Query: 4   AICHQIAQELNVRPEQVIAAVTLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLAYLR 63
           +I  +IA ++  + EQV AAV L+D G TVPFIARYRKEVTGGLDDTQLR L+ RL YLR
Sbjct: 3   SIEQRIANDIAAKTEQVRAAVDLLDGGATVPFIARYRKEVTGGLDDTQLRLLEERLRYLR 62

Query: 64  EMDDRRQTILKSIQEQGKLTPELEQAILSADSKNRLEDLYLPYKPKRRTKGQIAIEAGLE 123
           E+++RR  IL S++E GKL+  L+  +L+AD+K RLEDLYLP+KPKRRTK QIA EAGLE
Sbjct: 63  ELEERRAAILASVEEHGKLSDALKADLLAADTKARLEDLYLPFKPKRRTKAQIAREAGLE 122

Query: 124 PLADTLWTQPNTDPESEAAKYINAEKGVADSKAALDGARAIVMERIAEDANLLEKIRQHL 183
           PLA  L   P   PE+ A  +++A+KGVAD++AALDGARAI+ME IAEDA+L+ ++R  L
Sbjct: 123 PLALGLREDPTRTPEAFAEAFVDADKGVADARAALDGARAILMESIAEDAHLVGELRDWL 182

Query: 184 NRNAEIVSRVIEGKEQAGEKFKDYFDHREPISKAPSHRALAMLRGRNEGFLTLTLNADPE 243
               +I ++V+ GKE  G KF+DYFDH EPI+K PSHR LA++R RNEG + L L    +
Sbjct: 183 WAQGQIRAKVVAGKENEGAKFRDYFDHVEPIAKIPSHRLLALMRARNEGVIELELAPAAD 242

Query: 244 LEESARQSYCETLIAEHYGIHLSQATADAWRKQVISWAWKIKISMHMETELMSAMKERAE 303
            E+   +   E  +A H  IH     ADAW ++ +   W++K+ +H+  +L   ++E AE
Sbjct: 243 SEQGHAEG--EGRVAAHADIHNRGRAADAWLRETVRLTWRVKLHLHLTLDLFGRVREGAE 300

Query: 304 IEAIEVFATNLKDLLMAAPAGPRATLGLDPGLRTGCKVAVVDATGKVLATDTIYPHAPQH 363
            EAI VF  NLKDL++AAPAG +  +GLDPG+RTGCKVAVVDATGK+LATDTIYP  P+ 
Sbjct: 301 DEAIRVFGDNLKDLMLAAPAGAKTVMGLDPGIRTGCKVAVVDATGKLLATDTIYPLEPRR 360

Query: 364 QYDRAMQSIALLVKKFNVDLIAIGNGTASRETDAFAADLIKR-GNLKVQKIMVSEAGASV 422
           Q++ ++ S+A L ++  VDLIAIGNGT SRETD  AA+LI++    K+ K++VSEAGASV
Sbjct: 361 QWNESLVSLAKLCRQHGVDLIAIGNGTGSRETDKLAAELIRKLPEAKLSKVVVSEAGASV 420

Query: 423 YSASELAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTLLAKR 482
           YSASELAAKEFP LDVSLRGAVSIARRLQDPLAELVKI+PK+IGVGQYQHDV+Q  LA+ 
Sbjct: 421 YSASELAAKEFPELDVSLRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVNQIKLARA 480

Query: 483 LDAIVEDCVNAVGVDVNTASAALLTRVAGLSAALAQNIVDYRDENGRFESRSALKKVPRL 542
           LDA VEDCVNAVGVDVNTASAALL+RVAGLSA++A+N+V +RD NG F +R AL KVPRL
Sbjct: 481 LDAKVEDCVNAVGVDVNTASAALLSRVAGLSASVAENVVKHRDANGPFANRKALLKVPRL 540

Query: 543 GPKAFEQCAGFLRIMDGKNPLDASAVHPEAYPVVKTIAEKNSKDLKALIGNTEFLRTLRA 602
           G KAFEQCAGFLR+ +G NPLDASAVHPEAYPVV+ I  +  ++++ +IG++ FLR L+A
Sbjct: 541 GDKAFEQCAGFLRVPNGDNPLDASAVHPEAYPVVERIIAQCGREVRNIIGDSAFLRGLKA 600

Query: 603 VDYTDENFGVPTVTDIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVSNVA 662
             +TDE FGVPTV DI+KEL+KPGRDPRP F   +FAEG+ ++ DL  GM+LEG V+NVA
Sbjct: 601 EQFTDEKFGVPTVRDILKELEKPGRDPRPAFVAPSFAEGVEDLKDLRPGMILEGRVTNVA 660

Query: 663 NFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSMRLN 722
            FGAFVDIGVHQDGLVH+SAL+  F+ DPR+ VKAGDIVKVKVMEVD+ R+RI LSMRL+
Sbjct: 661 AFGAFVDIGVHQDGLVHVSALSHTFVKDPRDAVKAGDIVKVKVMEVDLPRQRIGLSMRLD 720

Query: 723 DEPGQDNRSQRSAAPRSGQERRAPRRDEPQGNALGGA-------MGGAFAAAFAKAKK 773
           DEPGQ    +  AA   G + R  +RD       GGA          AFA AFA+A K
Sbjct: 721 DEPGQARGGRAGAA---GNDTRGGQRDNRGPRPGGGAPKPAPAPASNAFADAFARAGK 775