Pairwise Alignments

Query, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

Subject, 789 a.a., Protein YhgF from Xanthobacter sp. DMC5

 Score =  875 bits (2260), Expect = 0.0
 Identities = 470/781 (60%), Positives = 575/781 (73%), Gaps = 17/781 (2%)

Query: 4   AICHQIAQELNVRPEQVIAAVTLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLAYLR 63
           AI   IA E+N RP QV AAV+LID+G TVPFIARYRKEVTGGLDDTQLR L+ RL+YLR
Sbjct: 11  AIARLIAAEINARPAQVTAAVSLIDEGATVPFIARYRKEVTGGLDDTQLRTLEERLSYLR 70

Query: 64  EMDDRRQTILKSIQEQGKLTPELEQAILSADSKNRLEDLYLPYKPKRRTKGQIAIEAGLE 123
           E++ RR  +L SI  QGKL+ EL   I +A +K  LEDLYLPYKPKRRTK +IA E GL 
Sbjct: 71  ELESRRAAVLSSIDGQGKLSDELRGKIEAATTKAELEDLYLPYKPKRRTKAEIAREKGLG 130

Query: 124 PLADTLWTQPNTDPESEAAKYINAEKGVADSKAALDGARAIVMERIAEDANLLEKIRQHL 183
           PLA+ +    +  P   AA ++N +  VAD KAALDGAR I++E  AE+A L+ ++R HL
Sbjct: 131 PLAEAILADRSVAPAERAAAFLNEQ--VADIKAALDGARDILVETFAENAELVGRLRGHL 188

Query: 184 NRNAEIVSRVIEGKEQAGEKFKDYFDHREPISKAPSHRALAMLRGRNEGFLTLTLNADPE 243
             NA + ++V EGKE+AG KF+DYFDH E  + APSHR LAMLRGRNE  LTL L  D +
Sbjct: 189 KANAMLKAKVAEGKEEAGAKFRDYFDHSEKWATAPSHRVLAMLRGRNEEMLTLDLVVDED 248

Query: 244 LEESARQSYCETLIAEHYGIHLSQ-ATADAWRKQVISWAWKIKISMHMETELMSAMKERA 302
                + +  E ++AE Y I L+  A AD +  +V  WAW++K+S+H+  ELM  M+ERA
Sbjct: 249 ATTPVKPA--ERIVAEAYDIPLANGAPADGFLLEVARWAWRVKLSLHLTVELMGEMRERA 306

Query: 303 EIEAIEVFATNLKDLLMAAPAGPRATLGLDPGLRTGCKVAVVDATGKVLATDTIYPHAPQ 362
           E EAI VFA NLKDLL+AAPAG RAT+GLDPG+RTG KVAVVD TGK++AT T+YP  P+
Sbjct: 307 EEEAIRVFARNLKDLLLAAPAGSRATMGLDPGIRTGVKVAVVDGTGKLIATSTVYPFQPR 366

Query: 363 HQYDRAMQSIALLVKKFNVDLIAIGNGTASRETDAFAADLIKR-----GNLKVQKIMVSE 417
           +    AM  +A L+++ NV+LIAIGNGTASRETD  AAD+I          K  K++VSE
Sbjct: 367 NDVQGAMAELAHLIRRHNVELIAIGNGTASRETDKLAADMIAALPPDASGKKPIKVVVSE 426

Query: 418 AGASVYSASELAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQT 477
           AGASVYSAS  AA E P++DVS+RGAVSIARRLQDPLAELVKI+PK+IGVGQYQHDV Q 
Sbjct: 427 AGASVYSASATAAAEMPDIDVSIRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVDQA 486

Query: 478 LLAKRLDAIVEDCVNAVGVDVNTASAALLTRVAGLSAALAQNIVDYRDENGRFESRSALK 537
            LAK LDA+VED VNAVGVD+NTASA+LL RV+GL A+LA+ IV +R+  G F++R  L 
Sbjct: 487 RLAKTLDAVVEDAVNAVGVDLNTASASLLARVSGLGASLAEAIVAHRNSVGAFKTRKELL 546

Query: 538 KVPRLGPKAFEQCAGFLRIMDGKNPLDASAVHPEAYPVVKTIAEKNSKDLKALIGNTEFL 597
           KV RLGP+ FE  AGFLRI DG  PLDASAVHPEAY V K I     +D++ ++G+T  L
Sbjct: 547 KVSRLGPRTFELAAGFLRIPDGAEPLDASAVHPEAYEVAKKIVAACGRDVRQIMGDTAAL 606

Query: 598 RTLRAVDYTDENFGVPTVTDIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGV 657
           + L    + DE FG+PTV DI+ EL+KPGRDPRP FKTATFAEG+HE+SDL+ GMVLEG 
Sbjct: 607 KALDPRAFVDERFGLPTVRDILTELEKPGRDPRPAFKTATFAEGVHEMSDLKPGMVLEGT 666

Query: 658 VSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIAL 717
           V+NVA FGAFVDIGVHQDGLVH+SAL DRF+ DP EVVKAGD+VKV+V+EVDV+RKRIAL
Sbjct: 667 VTNVAAFGAFVDIGVHQDGLVHVSALADRFVKDPHEVVKAGDVVKVRVVEVDVKRKRIAL 726

Query: 718 SMRLNDEPGQDNRSQRSAAPRS---GQERRAPRRDEP--QGNALGGAMGGAFAAAFAKAK 772
           SMR +D         R   PR+   G + R P+  +P  +G   GG   GAF AA A+A 
Sbjct: 727 SMRKDDAGASRPAGGRPDQPRNDLRGNDARRPQPSKPGDKGGDKGGQ--GAFGAALAEAM 784

Query: 773 K 773
           +
Sbjct: 785 R 785