Pairwise Alignments

Query, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

Subject, 774 a.a., transcription accessory protein from Pseudomonas simiae WCS417

 Score =  981 bits (2537), Expect = 0.0
 Identities = 499/774 (64%), Positives = 616/774 (79%), Gaps = 10/774 (1%)

Query: 4   AICHQIAQELNVRPEQVIAAVTLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLAYLR 63
           +I  +IA+EL VRP+QV AAV L+D+G+TVPFIARYRKEVTG LDDTQLR+L+ RL YLR
Sbjct: 3   SINSRIAEELGVRPQQVEAAVALLDEGSTVPFIARYRKEVTGSLDDTQLRHLEERLRYLR 62

Query: 64  EMDDRRQTILKSIQEQGKLTPELEQAILSADSKNRLEDLYLPYKPKRRTKGQIAIEAGLE 123
           E+D+RR +IL SI+EQGKLTP+LE+ I  AD+K RLEDLYLPYK KRRTKGQIA+EAGL 
Sbjct: 63  ELDERRISILASIEEQGKLTPQLERDIKLADTKTRLEDLYLPYKQKRRTKGQIALEAGLG 122

Query: 124 PLADTLWTQPNTDPESEAAKYINAEKGVADSKAALDGARAIVMERIAEDANLLEKIRQHL 183
            LAD L+  P+  PE+EAA++I+AEKGVAD KAAL+GA+ I+MER AEDA+LLEK+R +L
Sbjct: 123 DLADGLFNDPSLTPETEAARFIDAEKGVADVKAALEGAKYILMERFAEDASLLEKLRNYL 182

Query: 184 NRNAEIVSRVIEGKEQAGEKFKDYFDHREPISKAPSHRALAMLRGRNEGFLTLTLNADPE 243
            + A + +RVI GKE+ G KF+DYF+H EP+   PSHRALA+ RGRNEG L+  L    E
Sbjct: 183 KQEAILSARVIAGKEEEGAKFRDYFEHDEPLKSMPSHRALAIFRGRNEGILSSALKVGDE 242

Query: 244 LEESARQSYCETLIAEHYGIHLSQATADAWRKQVISWAWKIKISMHMETELMSAMKERAE 303
           L  +     CE +I + +GI      AD W  +V+ W WK+K+  H+ET+L+  +++ AE
Sbjct: 243 LPGTMHP--CEGMIGQQFGIQNQNRPADKWLGEVVRWTWKVKLYTHLETDLLGELRDGAE 300

Query: 304 IEAIEVFATNLKDLLMAAPAGPRATLGLDPGLRTGCKVAVVDATGKVLATDTIYPHAPQH 363
            EAI VFA NL DLL+AAPAGPRATLGLDPGLRTGCKVAVVD+TGK+L   T+YPH P +
Sbjct: 301 TEAINVFAHNLHDLLLAAPAGPRATLGLDPGLRTGCKVAVVDSTGKLLDHATVYPHVPHN 360

Query: 364 QYDRAMQSIALLVKKFNVDLIAIGNGTASRETDAFAADLIKR-GNLKVQKIMVSEAGASV 422
           ++D+ +  +A L  K  VDLIAIGNGTASRETD  AA+LIK+   +K+ K+MVSEAGASV
Sbjct: 361 KWDQTLAILAALCAKHAVDLIAIGNGTASRETDKLAAELIKKYPAMKMTKVMVSEAGASV 420

Query: 423 YSASELAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTLLAKR 482
           YSASELA+KEFP+LDVS+RGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQ  LA+ 
Sbjct: 421 YSASELASKEFPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKLARG 480

Query: 483 LDAIVEDCVNAVGVDVNTASAALLTRVAGLSAALAQNIVDYRDENGRFESRSALKKVPRL 542
           LDA+VEDCVNAVGVDVNTAS ALL R++GL+A LAQNIV++RDENG F++R+ALKKV RL
Sbjct: 481 LDAVVEDCVNAVGVDVNTASVALLARISGLNATLAQNIVNHRDENGAFKTRAALKKVARL 540

Query: 543 GPKAFEQCAGFLRIMDGKNPLDASAVHPEAYPVVKTIAEKNSKDLKALIGNTEFLRTLRA 602
           G K FEQ AGFLR+M+G NPLD+SAVHPEAYP+V+ IA +  +D+++LIG+  FL+ L  
Sbjct: 541 GEKTFEQAAGFLRVMNGDNPLDSSAVHPEAYPLVQRIAAETDRDIRSLIGDAAFLKRLDP 600

Query: 603 VDYTDENFGVPTVTDIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVSNVA 662
             YTDE FGVPT+TDI++EL+KPGRDPRPEFKTA F +G+ ++ DLE+GM+LEGVV+NV 
Sbjct: 601 KKYTDETFGVPTITDILQELEKPGRDPRPEFKTAEFQDGVEDLKDLELGMILEGVVTNVT 660

Query: 663 NFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSMRLN 722
           NFGAFVDIGVHQDGLVHISAL+++FI DPRE VKAGD+VKVKVMEVD+ RKR+ LSMR++
Sbjct: 661 NFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLSMRMS 720

Query: 723 DEPGQDNRSQRSAAPRSG---QERRAPRRDEPQGNALGGAMGGAFAAAFAKAKK 773
           D PG+     R A P S     +  APR++     A       A A+ FA AK+
Sbjct: 721 DTPGEKIDGARGARPGSAPRQSQNNAPRKE----TATAAPSNNAMASLFANAKQ 770