Pairwise Alignments

Query, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

Subject, 791 a.a., Transcription accessory protein (S1 RNA-binding domain) from Variovorax sp. SCN45

 Score =  788 bits (2035), Expect = 0.0
 Identities = 426/792 (53%), Positives = 549/792 (69%), Gaps = 36/792 (4%)

Query: 5   ICHQIAQELNVRPEQVIAAVTLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLAYLRE 64
           I  Q+A E+ V   QV AAV L+D G TVPFIARYRKE T GLDDTQLR L++RL+YLRE
Sbjct: 4   IIRQLAAEIKVGENQVKAAVELLDGGATVPFIARYRKEATDGLDDTQLRELEARLSYLRE 63

Query: 65  MDDRRQTILKSIQEQGKLTPELEQAILSADSKNRLEDLYLPYKPKRRTKGQIAIEAGLEP 124
           ++DRR  +LK+I EQGKLTPEL  AI  A +K  LED+YLP+K KRRTKGQIA E G+EP
Sbjct: 64  LEDRRVAVLKAIDEQGKLTPELRAAIEFAPTKQELEDIYLPFKQKRRTKGQIAREFGIEP 123

Query: 125 LADTLWTQPNTDPESEAAKYINAEKGVADSKAA---------LDGARAIVMERIAEDANL 175
           LAD L   P  DP  EA  ++     + D K           LDG R I+ ER AEDA L
Sbjct: 124 LADKLLADPTLDPAVEAKAFLQPATTLDDGKPGPDFSTVPLVLDGVRDILSERWAEDAAL 183

Query: 176 LEKIRQHLNRNAEIVSRVIEGKEQAGE---KFKDYFDHREPISKAPSHRALAMLRGRNEG 232
           ++ +R  L     + S ++ GK++      KF+DYF++ EPI + PSHRALA+ RGR   
Sbjct: 184 VQSLRVWLWNEGLLKSSLMSGKDENNADVAKFRDYFEYDEPIGRVPSHRALAVFRGRALD 243

Query: 233 FLT--LTLNADPELEESARQSYCETLIAEHYGIHLSQATADAWRKQVISWAWKIKISMHM 290
            L   L L  +PE     + S  E  IA H G   +   AD   ++ ++W W++K+++  
Sbjct: 244 ILDAKLVLPVEPE---PGKPSVAEGRIALHLGWSHAGRPADDLLRKCVAWTWRVKLALST 300

Query: 291 ETELMSAMKERAEIEAIEVFATNLKDLLMAAPAGPRATLGLDPGLRTGCKVAVVDATGKV 350
           E +L + ++E AE  AI+VFA NL+DLL+AAPAGPR  +GLDPG+RTG KVAVVD+TGK+
Sbjct: 301 ERDLFTRLREDAEKVAIKVFADNLRDLLLAAPAGPRVVMGLDPGIRTGVKVAVVDSTGKL 360

Query: 351 LATDTIYPHAPQHQYDRAMQSIALLVKKFNVDLIAIGNGTASRETDAFAADLIK------ 404
           + T T++PH P+  ++ ++ ++  L  K  V+LIAIGNGTASRETD  AADLIK      
Sbjct: 361 VETATVFPHEPRKDWEGSLHTLGKLCAKHGVNLIAIGNGTASRETDKLAADLIKLLAKMA 420

Query: 405 ----RGNLKVQKIMVSEAGASVYSASELAAKEFPNLDVSLRGAVSIARRLQDPLAELVKI 460
                  ++V K++VSEAGASVYSASE A++E P++DVSLRGA SIARRLQDPLAELVKI
Sbjct: 421 AQAGAPEIQVDKVVVSEAGASVYSASEFASQEMPDVDVSLRGAASIARRLQDPLAELVKI 480

Query: 461 DPKSIGVGQYQHDVSQTLLAKRLDAIVEDCVNAVGVDVNTASAALLTRVAGLSAALAQNI 520
           DPKSIGVGQYQHDV+Q+ LA+ L A+VEDCVN+VGVD+NTAS  LL+RV+GLSA++A+ +
Sbjct: 481 DPKSIGVGQYQHDVNQSELARTLQAVVEDCVNSVGVDLNTASVPLLSRVSGLSASVAKAV 540

Query: 521 VDYRDENGRFESRSALKKVPRLGPKAFEQCAGFLRIMDGKNPLDASAVHPEAYPVVKTIA 580
           V +R+ NG F +R  L  V   GPKAFEQ AGFLRI  G +PLD + VHPE YP+V+ I 
Sbjct: 541 VRWRESNGAFATRKQLLDVTGFGPKAFEQSAGFLRIRGGTDPLDVTGVHPETYPLVEQII 600

Query: 581 EKNSKDLKALIGNTEFLRTLRAVDYTDENFGVPTVTDIIKELDKPGRDPRPEFKTATFAE 640
            K  K +  L+G  E L+TL+   + +E FGV TV DI+ EL+KPGRDPRP+FK A F +
Sbjct: 601 VKTGKPIAELMGRAEMLKTLKPELFANEKFGVITVKDILGELEKPGRDPRPDFKVARFND 660

Query: 641 GIHEVSDLEVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDI 700
           G+ +++DL+ GM+LEG VSNVA FGAFVD+GVHQDGLVH+S L+ +F++D REVVK GDI
Sbjct: 661 GVDDIADLKEGMILEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREVVKTGDI 720

Query: 701 VKVKVMEVDVQRKRIALSMRLNDEPGQDN--RSQRSAAPRSGQERRAPRRDEPQGNALGG 758
           VKVKVMEVDV RKRI LSM+L+  P + +  R  R      GQ+++  R + PQ      
Sbjct: 721 VKVKVMEVDVARKRIGLSMKLDAAPARRDGPRDNRFEGAGRGQQQQGRRDNSPQ------ 774

Query: 759 AMGGAFAAAFAK 770
              G  A+AFAK
Sbjct: 775 -PAGQMASAFAK 785