Pairwise Alignments

Query, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

Subject, 861 a.a., putative transcriptional accessory protein from Pseudomonas putida KT2440

 Score =  975 bits (2521), Expect = 0.0
 Identities = 498/773 (64%), Positives = 612/773 (79%), Gaps = 8/773 (1%)

Query: 4   AICHQIAQELNVRPEQVIAAVTLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLAYLR 63
           +I  +IA+EL VRP+QV AAV+L+D+G+TVPFIARYRKEVTG LDDTQLR+L+ RL YLR
Sbjct: 90  SINSRIAEELGVRPQQVEAAVSLLDEGSTVPFIARYRKEVTGSLDDTQLRHLEERLRYLR 149

Query: 64  EMDDRRQTILKSIQEQGKLTPELEQAILSADSKNRLEDLYLPYKPKRRTKGQIAIEAGLE 123
           E+D+RR +IL SI+EQGKLTPEL + I  AD+K RLEDLYLPYK KRRTKGQIA+EAGL 
Sbjct: 150 ELDERRASILSSIEEQGKLTPELAREIKLADTKTRLEDLYLPYKQKRRTKGQIALEAGLG 209

Query: 124 PLADTLWTQPNTDPESEAAKYINAEKGVADSKAALDGARAIVMERIAEDANLLEKIRQHL 183
            LAD L+  P   PESEAA+++NAEKGVAD KAAL+GA+ I+MER AEDA LL+K+R +L
Sbjct: 210 ELADGLFNDPTLAPESEAARFVNAEKGVADVKAALEGAKYILMERFAEDAALLDKLRSYL 269

Query: 184 NRNAEIVSRVIEGKEQAGEKFKDYFDHREPISKAPSHRALAMLRGRNEGFLTLTLNADPE 243
            + A + +RV+ GKE+ G KF+DYF H E +  APSHRALA+ RGRNEG L+++L    E
Sbjct: 270 KQEAVLSARVVAGKEEEGAKFRDYFAHDELLRTAPSHRALAIFRGRNEGVLSVSLKVGEE 329

Query: 244 LEESARQSYCETLIAEHYGIHLSQATADAWRKQVISWAWKIKISMHMETELMSAMKERAE 303
           L  +     CE +I  H GI      AD W  +V+ W WK+K+  H+ET+L   +++ AE
Sbjct: 330 LPGTLHP--CELMIGNHVGIENRSRPADKWLGEVVRWTWKVKLYTHLETDLFGELRDSAE 387

Query: 304 IEAIEVFATNLKDLLMAAPAGPRATLGLDPGLRTGCKVAVVDATGKVLATDTIYPHAPQH 363
            EAI VFA NL DLL+AAPAGPRATLG DPGLRTGCK+AVVDATGK+L   T+YPHAP++
Sbjct: 388 GEAINVFAHNLHDLLLAAPAGPRATLGFDPGLRTGCKIAVVDATGKLLDHTTVYPHAPKN 447

Query: 364 QYDRAMQSIALLVKKFNVDLIAIGNGTASRETDAFAADLIKR-GNLKVQKIMVSEAGASV 422
            +DR +  +A L  K +V+LIAIGNGTASRE+D    +L+K+   LK+ KIMVSEAGASV
Sbjct: 448 DWDRTISIMAALCAKHSVELIAIGNGTASRESDKLVTELVKKYPALKITKIMVSEAGASV 507

Query: 423 YSASELAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTLLAKR 482
           YSASELAA+EFP+LDVS+RGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQ  LA+ 
Sbjct: 508 YSASELAAREFPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKLARG 567

Query: 483 LDAIVEDCVNAVGVDVNTASAALLTRVAGLSAALAQNIVDYRDENGRFESRSALKKVPRL 542
           LDA+VEDCVNAVGVDVNTAS ALLTR++GL+A LAQNIV +RD NG F +R+ALKKV RL
Sbjct: 568 LDAVVEDCVNAVGVDVNTASVALLTRISGLNATLAQNIVAHRDANGPFATRAALKKVSRL 627

Query: 543 GPKAFEQCAGFLRIMDGKNPLDASAVHPEAYPVVKTIAEKNSKDLKALIGNTEFLRTLRA 602
           G K FEQ AGFLR+M+G NPLDASAVHPEAYP+V+ IA    +D+++LIG++ FL+ L  
Sbjct: 628 GEKTFEQAAGFLRVMNGDNPLDASAVHPEAYPLVQRIAADTDRDIRSLIGDSSFLKRLDP 687

Query: 603 VDYTDENFGVPTVTDIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVSNVA 662
             +TDE FG+PTVTDI++ELDKPGRDPRPEFKTATF +G+ ++ DLE GM+LEGVV+NV 
Sbjct: 688 KKFTDETFGLPTVTDILQELDKPGRDPRPEFKTATFQDGVEDLKDLEPGMILEGVVTNVT 747

Query: 663 NFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSMRLN 722
           NFGAFVDIGVHQDGLVHISAL+++F+ DPRE VKAGD+VKVKVMEVD+ RKR+ LSMR++
Sbjct: 748 NFGAFVDIGVHQDGLVHISALSEKFVKDPREAVKAGDVVKVKVMEVDIPRKRVGLSMRMS 807

Query: 723 DEPGQDNRSQRSAAPRSG--QERRAPRRDEPQGNALGGAMGGAFAAAFAKAKK 773
           D PG+     R     +G  ++++APR+ E    A       A AA FA AK+
Sbjct: 808 DTPGEKVEGNRGGNRGNGGNRQQQAPRQRE---TATAAPANNAMAALFANAKQ 857