Pairwise Alignments

Query, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

Subject, 822 a.a., Transcription accessory protein (S1 RNA-binding domain) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  805 bits (2080), Expect = 0.0
 Identities = 439/792 (55%), Positives = 552/792 (69%), Gaps = 31/792 (3%)

Query: 5   ICHQIAQELNVRPEQVIAAVTLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLAYLRE 64
           I  QIA E+ V   QV AAV L+D G TVPFIARYRKEVTGGLDD QLR L  RL YLRE
Sbjct: 37  IIRQIATEIRVEERQVQAAVELLDGGATVPFIARYRKEVTGGLDDIQLRELSYRLDYLRE 96

Query: 65  MDDRRQTILKSIQEQGKLTPELEQAILSADSKNRLEDLYLPYKPKRRTKGQIAIEAGLEP 124
           ++DRR  +LKSI EQGKLT  L  AI +  +K  LEDLYLP+K KRRTKGQIA E G+EP
Sbjct: 97  LEDRRAAVLKSIDEQGKLTDALRAAIAAVPTKQELEDLYLPFKQKRRTKGQIAREFGIEP 156

Query: 125 LADTLWTQPNTDPESEAAKYINAEKGVADSK---------AALDGARAIVMERIAEDANL 175
           LAD L+  P  DP +EAA +    + + D K         A LDG R I+ ER AED +L
Sbjct: 157 LADKLFADPTLDPSTEAAAFTRPPEVLDDGKPGADFSTVPAVLDGVRDILSERWAEDPSL 216

Query: 176 LEKIRQHLNRNAEIVSRVIEGKEQAGE---KFKDYFDHREPISKAPSHRALAMLRGRNEG 232
           ++ +R+ L     + S ++ GK++      KF+DYF++ EPI++ PSHRALA+ RGR   
Sbjct: 217 VQNLREWLWSEGLLKSTLVNGKDENAPEVAKFRDYFEYDEPIARVPSHRALAVFRGRGLE 276

Query: 233 FLTLTL------NADPELEESARQSYCETLIAEHYGIHLSQATADAWRKQVISWAWKIKI 286
            L   L      +A P  +  A  S  E  IA H G       AD   ++ ++W W++K+
Sbjct: 277 ILDAKLVLPEPPDAVPAGKPGATPSLAEGRIALHLGWSHKARAADDLLRKCMAWTWRVKL 336

Query: 287 SMHMETELMSAMKERAEIEAIEVFATNLKDLLMAAPAGPRATLGLDPGLRTGCKVAVVDA 346
           S+  E +L + ++E AE  AI+VFA NL+DLL+AAPAGP+  +GLDPG+RTG KVAVVDA
Sbjct: 337 SLSSERDLFARLRESAEAVAIKVFADNLRDLLLAAPAGPKVVMGLDPGIRTGVKVAVVDA 396

Query: 347 TGKVLATDTIYPHAPQHQYDRAMQSIALLVKKFNVDLIAIGNGTASRETDAFAADLIK-- 404
           TGK++ T T+YPH P+  +D A+ ++ALL +K  V+LIAIGNGTASRETD  AADLIK  
Sbjct: 397 TGKLVDTATVYPHEPRRDWDGALHTLALLGRKHGVNLIAIGNGTASRETDKLAADLIKLL 456

Query: 405 -RGNLK-VQKIMVSEAGASVYSASELAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDP 462
            + NL  VQK++VSEAGASVYSASE A++E P++DVSLRGA SIARRLQDPLAELVKIDP
Sbjct: 457 EKANLTGVQKVVVSEAGASVYSASEFASQEMPDVDVSLRGAASIARRLQDPLAELVKIDP 516

Query: 463 KSIGVGQYQHDVSQTLLAKRLDAIVEDCVNAVGVDVNTASAALLTRVAGLSAALAQNIVD 522
           KSIGVGQYQHDV+Q+ LA+ L+A+VEDCVN VGVD+NTAS  LL+RV+GLS ++A+ +V 
Sbjct: 517 KSIGVGQYQHDVNQSELARTLEAVVEDCVNGVGVDLNTASVPLLSRVSGLSGSVAKAVVR 576

Query: 523 YRDENGRFESRSALKKVPRLGPKAFEQCAGFLRIMDGKNPLDASAVHPEAYPVVKTIAEK 582
           +R+ NG F+SR  L  V  LG K FEQ AGFLRI  G NPLD + VHPE Y VV+ I EK
Sbjct: 577 WRETNGAFKSRQQLMDVAGLGAKTFEQSAGFLRIRGGDNPLDMTGVHPETYAVVEQIMEK 636

Query: 583 NSKDLKALIGNTEFLRTLRAVDYTDENFGVPTVTDIIKELDKPGRDPRPEFKTATFAEGI 642
             K +  L+G  + L+TLR   + +E FGV TV DI+ EL+KPGRDPRP+F+ A F EG+
Sbjct: 637 TGKPVAELMGRADMLKTLRPELFANERFGVITVKDILGELEKPGRDPRPDFQVARFNEGV 696

Query: 643 HEVSDLEVGMVLEGVVSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVK 702
            ++SDL  GMVLEG VSNVA FGAFVD+GVHQDGLVH+S L+ +F++D RE+VK GDIVK
Sbjct: 697 DDISDLREGMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREIVKTGDIVK 756

Query: 703 VKVMEVDVQRKRIALSMRLNDEPG-QDNRSQRSAAPRSGQERRAPRRDEPQGNALGGAMG 761
           VKVMEVDV RKRI LSM+L+  P  +D        P  GQ R +     P  +A+     
Sbjct: 757 VKVMEVDVARKRIGLSMKLDAAPARRDGPRDNRYEPSRGQGRASGPASPPAPSAM----- 811

Query: 762 GAFAAAFAKAKK 773
              A+AFAK K+
Sbjct: 812 ---ASAFAKLKR 820