Pairwise Alignments

Query, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

Subject, 787 a.a., RNA-binding transcriptional accessory protein from Magnetospirillum magneticum AMB-1

 Score =  925 bits (2390), Expect = 0.0
 Identities = 485/777 (62%), Positives = 587/777 (75%), Gaps = 10/777 (1%)

Query: 4   AICHQIAQELNVRPEQVIAAVTLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLAYLR 63
           AI ++IA EL V+P QV A V ++D+G TVPFIARYRKE T GLDDTQLRNL+ RL YLR
Sbjct: 12  AITNRIALELGVKPSQVAATVQMLDEGATVPFIARYRKEATDGLDDTQLRNLEERLGYLR 71

Query: 64  EMDDRRQTILKSIQEQGKLTPELEQAILSADSKNRLEDLYLPYKPKRRTKGQIAIEAGLE 123
           E++DRR  IL+SI+EQGKLTP+L   I  ADSK RLEDLYLPYKPKRRTK QIA EAGLE
Sbjct: 72  ELEDRRAAILRSIEEQGKLTPDLAGQIGEADSKARLEDLYLPYKPKRRTKAQIAREAGLE 131

Query: 124 PLADTLWTQPNTDPESEAAKYINAEKGVADSKAALDGARAIVMERIAEDANLLEKIRQHL 183
           PLAD L   P   PE  A  Y++AEKGVAD KAALDGAR I+MER AEDA LL  +R  L
Sbjct: 132 PLADALLADPALVPEQAAEPYVDAEKGVADVKAALDGARQILMERFAEDAELLGNLRDAL 191

Query: 184 NRNAEIVSRVIEGKEQAGEKFKDYFDHREPISKAPSHRALAMLRGRNEGFLTLTL----- 238
                ++S V EGK +AG KF DYFD+RE I   PSHRALA+ RGRNE  L L L     
Sbjct: 192 WDGGVLISTVAEGKSEAGAKFSDYFDYREAIKAIPSHRALALFRGRNENVLNLKLLTPDE 251

Query: 239 NADPELEESARQSYCETLIAEHYGIHLSQATADAWRKQVISWAWKIKISMHMETELMSAM 298
            A P+   S      E  IA  + +   +  AD+W  + + WAW+IKI +H+E ELMS +
Sbjct: 252 AARPDGTVSQGPGEFEARIARRFSVRDLKRPADSWLAETVRWAWRIKIHLHLELELMSRL 311

Query: 299 KERAEIEAIEVFATNLKDLLMAAPAGPRATLGLDPGLRTGCKVAVVDATGKVLATDTIYP 358
           +E AE EAI VFA NL+ LL+ APAG R  +GLDPG+RTG KVAV DATGKV+ T TIYP
Sbjct: 312 REAAEAEAINVFARNLRALLLQAPAGARNCIGLDPGIRTGVKVAVTDATGKVVETATIYP 371

Query: 359 HAPQHQYDRAMQSIALLVKKFNVDLIAIGNGTASRETDAFAADLIKRG-NLKVQKIMVSE 417
           H P++ +  ++ +IA L +K  + L+AIGNGTASRETD    D++KR  +L ++K++VSE
Sbjct: 372 HQPRNDWQGSVAAIAHLARKHGIKLVAIGNGTASRETDRLVIDVMKRHPDLGLEKLVVSE 431

Query: 418 AGASVYSASELAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQT 477
           AGASVYSASELAAKEFP+LDVSLRGAVSIARRLQDPLAELVKIDPK+IGVGQYQHDV Q 
Sbjct: 432 AGASVYSASELAAKEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKAIGVGQYQHDVDQV 491

Query: 478 LLAKRLDAIVEDCVNAVGVDVNTASAALLTRVAGLSAALAQNIVDYRDENGRFESRSALK 537
            L + LDA+VEDCVNAVGV+VNTASA LL RVAGLS  +A+N+V++RD  G F SR ALK
Sbjct: 492 KLGRSLDAVVEDCVNAVGVEVNTASAPLLARVAGLSPTVARNVVEFRDRFGPFASREALK 551

Query: 538 KVPRLGPKAFEQCAGFLRIMDGKNPLDASAVHPEAYPVVKTIAEKNSKDLKALIGNTEFL 597
           +V RLG KAFEQ AGFLR++ G NPLD+SAVHPEAYPVV+ I +   + +KALIG++ F+
Sbjct: 552 QVERLGAKAFEQAAGFLRVVGGVNPLDSSAVHPEAYPVVERIVKATGRPVKALIGDSSFI 611

Query: 598 RTLRAVDYTDENFGVPTVTDIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGV 657
           R+L   ++TDE FG PTV DI+KEL+KPGRDPRPEFKTA F EG+  ++DL+ GM+LEGV
Sbjct: 612 RSLDPKEFTDERFGEPTVKDILKELEKPGRDPRPEFKTAAFKEGVETLNDLKPGMILEGV 671

Query: 658 VSNVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIAL 717
           V+NV NFGAFVDIGVHQDGLVHIS L DRF+ DP EVVK GD+VKVKV+EVD++R RIAL
Sbjct: 672 VTNVTNFGAFVDIGVHQDGLVHISVLADRFVKDPHEVVKPGDLVKVKVLEVDIKRSRIAL 731

Query: 718 SMRLNDEPGQDNRSQRSAAPRSGQERRAPRRDEPQGNA-LGGAMGGAFAAAFAKAKK 773
           SMR++ +P     +++  APR  + R AP+  + Q  A      GGAFAAAFAKA++
Sbjct: 732 SMRMDAQPAP---ARKDDAPRRDERRPAPQAQQRQPAAPKADEGGGAFAAAFAKARQ 785