Pairwise Alignments

Query, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

Subject, 776 a.a., Transcription accessory protein (S1 RNA-binding domain) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 1020 bits (2638), Expect = 0.0
 Identities = 522/777 (67%), Positives = 625/777 (80%), Gaps = 7/777 (0%)

Query: 1   MSKAICHQIAQELNVRPEQVIAAVTLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLA 60
           M+ + C  IA E+     QV AAV L+D+GNTVPFIARYRKE+TGGLDDTQLRNL++RL 
Sbjct: 2   MNDSFCRIIAGEIQANAGQVEAAVRLLDEGNTVPFIARYRKEITGGLDDTQLRNLETRLG 61

Query: 61  YLREMDDRRQTILKSIQEQGKLTPELEQAILSADSKNRLEDLYLPYKPKRRTKGQIAIEA 120
           YLRE++DRRQ ILKSI EQGKLT EL  AI +  SK  LEDLYLPYKPKRRT+GQIAIEA
Sbjct: 62  YLRELEDRRQAILKSISEQGKLTDELAGAINATLSKTELEDLYLPYKPKRRTRGQIAIEA 121

Query: 121 GLEPLADTLWTQPNTDPESEAAKYINAEKGVADSKAALDGARAIVMERIAEDANLLEKIR 180
           GLEPLAD LW +P+ DP+ EAAKYI+ +KGVAD+KAALDGAR I+MER AEDA LL K+R
Sbjct: 122 GLEPLADLLWNEPSHDPDVEAAKYIDGDKGVADTKAALDGARYILMERFAEDAALLAKVR 181

Query: 181 QHLNRNAEIVSRVIEGKEQAGEKFKDYFDHREPISKAPSHRALAMLRGRNEGFLTLTLNA 240
            +L +NA +V+ V+ GKE+ G KF+DYFDH EPI+  PSHRALAM RGRNEG L L+LNA
Sbjct: 182 DYLWKNAHLVATVVSGKEEEGAKFRDYFDHHEPIANVPSHRALAMFRGRNEGILQLSLNA 241

Query: 241 DPELEESARQSYCETLIAEHYGIHLSQATADAWRKQVISWAWKIKISMHMETELMSAMKE 300
           DP+ +E  ++SYCE +I +H G+ L+ A AD+WRK V+SW W+IK+ MH+ETELM  ++E
Sbjct: 242 DPQFDEPPKESYCEQIIMDHLGLRLNNAPADSWRKGVVSWTWRIKVLMHLETELMGTVRE 301

Query: 301 RAEIEAIEVFATNLKDLLMAAPAGPRATLGLDPGLRTGCKVAVVDATGKVLATDTIYPHA 360
           RAE EAI VFA NL DLLMAAPAG RAT+GLDPGLRTG KVAVVD TGK++ATDTIYPH 
Sbjct: 302 RAEDEAINVFARNLHDLLMAAPAGLRATMGLDPGLRTGVKVAVVDGTGKLVATDTIYPHT 361

Query: 361 PQHQYDRAMQSIALLVKKFNVDLIAIGNGTASRETDAFAADLIKR-GNLKVQKIMVSEAG 419
            Q    +A   IA L +K++V+L+AIGNGTASRET+ F  D+ K+  N+  QK++VSEAG
Sbjct: 362 GQAA--KAATVIAALCEKYHVELVAIGNGTASRETERFYLDVQKQFPNVTAQKVIVSEAG 419

Query: 420 ASVYSASELAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTLL 479
           ASVYSASELAA+EFP+LDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQT L
Sbjct: 420 ASVYSASELAAQEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTQL 479

Query: 480 AKRLDAIVEDCVNAVGVDVNTASAALLTRVAGLSAALAQNIVDYRDENGRFESRSALKKV 539
           A++LDA+VEDCVNAVGVD+NTAS  LLTRVAGL+  +AQNIV +RDENG+F++R  L KV
Sbjct: 480 ARKLDAVVEDCVNAVGVDLNTASVPLLTRVAGLTRMMAQNIVAWRDENGQFQNRQQLLKV 539

Query: 540 PRLGPKAFEQCAGFLRIMDGKNPLDASAVHPEAYPVVKTIAEKNSKDLKALIGNTEFLRT 599
            RLGPKAFEQCAGFLRI  G NPLDAS VHPEAYPVV+ I     + LK L+GN+  LR 
Sbjct: 540 SRLGPKAFEQCAGFLRINHGDNPLDASTVHPEAYPVVERILAATQQALKDLMGNSNELRH 599

Query: 600 LRAVDYTDENFGVPTVTDIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVS 659
           L+A D+TD+ FGVPTV+DIIKEL+KPGRDPRPEFKTA FA+G+  ++DL  GM+LEG V+
Sbjct: 600 LKAADFTDDKFGVPTVSDIIKELEKPGRDPRPEFKTAQFADGVETMNDLLPGMILEGAVT 659

Query: 660 NVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSM 719
           NV NFGAFVDIGVHQDGLVHIS+L+ +F+ DP  VVKAGDIVKVKV+EVD+QRKRIAL+M
Sbjct: 660 NVTNFGAFVDIGVHQDGLVHISSLSTKFVDDPHTVVKAGDIVKVKVLEVDLQRKRIALTM 719

Query: 720 RLNDEPGQDNRSQRSAAPRSGQERRAPRRDEPQGN----ALGGAMGGAFAAAFAKAK 772
           RL+++PG+    +   A R+   R A +  +P+G     A   AM  A AAA  K +
Sbjct: 720 RLDEQPGETAARRGGGADRAQGNRPASKAAKPRGRDAQPAGNSAMMDALAAAMGKKR 776