Pairwise Alignments

Query, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

Subject, 773 a.a., Transcriptional accessory protein from Kangiella aquimarina DSM 16071

 Score =  900 bits (2325), Expect = 0.0
 Identities = 470/774 (60%), Positives = 586/774 (75%), Gaps = 10/774 (1%)

Query: 5   ICHQIAQELNVRPEQVIAAVTLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLAYLRE 64
           I  QIAQELNVRP+QV AAV L+D+G+TVPFIARYRKEVTG LDDTQLR+L+ RL YLRE
Sbjct: 4   INQQIAQELNVRPQQVEAAVRLLDEGSTVPFIARYRKEVTGALDDTQLRDLEQRLGYLRE 63

Query: 65  MDDRRQTILKSIQEQGKLTPELEQAILSADSKNRLEDLYLPYKPKRRTKGQIAIEAGLEP 124
           ++DRR  ILKSI+EQ KLTPEL+ +I +A +K+ LEDLYLPYKPKRRTK QIA EAGLEP
Sbjct: 64  LEDRRAAILKSIEEQEKLTPELKSSIEAATTKSELEDLYLPYKPKRRTKAQIAREAGLEP 123

Query: 125 LADTLWTQPNTDPESEAAKYINAEKGVADSKAALDGARAIVMERIAEDANLLEKIRQHLN 184
           LA  LW  P  DPE+EA KY+N E  +  +K ALDGAR I+ME  AE+A+LL+ +R++L 
Sbjct: 124 LAMDLWQNPTLDPEAEAEKYLNPEHKIETTKDALDGARQILMEVFAENADLLKTLREYLW 183

Query: 185 RNAEIVSRVIEGKEQAGEKFKDYFDHREPISKAPSHRALAMLRGRNEGFLTLTLNADPEL 244
            NA I S+VIEGKE+ G KF DYFDH E     PSHR LA+LRGRNE  LTL + ++ +L
Sbjct: 184 DNAYIHSKVIEGKEKEGIKFSDYFDHSEAFKTIPSHRILALLRGRNENILTLQMVSNQDL 243

Query: 245 -EESARQSYCETLIAEHYGIHLSQATADAWRKQVISWAWKIKISMHMETELMSAMKERAE 303
            ++      C +++A+H+ I   +  AD W +QV+ W WKIK+ +++ETEL++ ++E  E
Sbjct: 244 IKDPEASDPCLSMVADHFNIKDQKRAADYWLQQVVLWTWKIKLHLYLETELLAKVRELGE 303

Query: 304 IEAIEVFATNLKDLLMAAPAGPRATLGLDPGLRTGCKVAVVDATGKVLATDTIYPHAPQH 363
            EAI +FA NL DLLMAAPAG +  +GLDPGLRTG K  +VD TGK+L   TI+PHAPQ+
Sbjct: 304 TEAIRIFARNLNDLLMAAPAGAKTNMGLDPGLRTGTKAVIVDETGKLLTQTTIFPHAPQN 363

Query: 364 QYDRAMQSIALLVKKFNVDLIAIGNGTASRETDAFAADLIKRG-NLKVQKIMVSEAGASV 422
           Q+D++++ +  L +   V+L++IGNGTASRETD   A+L+K    LK+QKIMVSEAGASV
Sbjct: 364 QWDQSLRKLQTLCEMHKVELVSIGNGTASRETDKLVAELMKMAPQLKLQKIMVSEAGASV 423

Query: 423 YSASELAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTLLAKR 482
           YSAS LAA+EFP+LDVS RGAVSIARRLQDPLAELVKI+PKSIGVGQYQHDVSQ+ LAK 
Sbjct: 424 YSASALAAQEFPDLDVSYRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVSQSQLAKS 483

Query: 483 LDAIVEDCVNAVGVDVNTASAALLTRVAGLSAALAQNIVDYRDENGRFESRSALKKVPRL 542
           LD +VEDCVNAVGVD+N AS  LLTRV+GLS  +AQNIV++RD NGRF +R  L +V R+
Sbjct: 484 LDGVVEDCVNAVGVDLNMASVPLLTRVSGLSKTIAQNIVNWRDTNGRFNNRKQLLEVERM 543

Query: 543 GPKAFEQCAGFLRIMDGKNPLDASAVHPEAYPVV-KTIAEKNSKDLKALIGNTEFLRTLR 601
           GPK +EQ AGFLRI DG N LD+SAVHPEAYPVV K +     +D+  L+GNT+ LR ++
Sbjct: 544 GPKTYEQAAGFLRIRDGDNALDSSAVHPEAYPVVEKMMQSLELQDVHQLMGNTDKLRQIK 603

Query: 602 AVDYTDENFGVPTVTDIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVSNV 661
           A ++TDE FG+ TV DI+KELDKPGRDPRPEFK   F EG+  ++DL++GM LEGVV+NV
Sbjct: 604 AQEFTDETFGLHTVNDILKELDKPGRDPRPEFKMVRFKEGVETLNDLKIGMELEGVVTNV 663

Query: 662 ANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSMRL 721
             FGAF+D+GVHQDGLVH+S + + FI DP EVVKAGDIVKV V++VD+QRKRI+LSM  
Sbjct: 664 TAFGAFIDVGVHQDGLVHLSMMANEFIKDPAEVVKAGDIVKVWVLDVDMQRKRISLSM-- 721

Query: 722 NDEPGQDNR-SQRSAAPRSGQERRAPRRDEPQGNALGGAM-GGAFAAAFAKAKK 773
               G D++ + + A  R  Q  +       Q N  G     GAFA A A A K
Sbjct: 722 ---IGPDSQAASKPAQKRDAQSHKKGNFKGNQSNKRGQTKPQGAFADALAAALK 772