Pairwise Alignments

Query, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

Subject, 772 a.a., RNA-binding transcriptional accessory protein from Erwinia tracheiphila SCR3

 Score = 1019 bits (2635), Expect = 0.0
 Identities = 529/775 (68%), Positives = 622/775 (80%), Gaps = 11/775 (1%)

Query: 1   MSKAICHQIAQELNVRPEQVIAAVTLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLA 60
           M  ++ H IA EL  R EQV AAV L+D+GNTVPFIARYRKEVTGGLDDTQLR L++RL 
Sbjct: 2   MKDSLNHIIANELQARTEQVDAAVRLLDEGNTVPFIARYRKEVTGGLDDTQLRQLETRLG 61

Query: 61  YLREMDDRRQTILKSIQEQGKLTPELEQAILSADSKNRLEDLYLPYKPKRRTKGQIAIEA 120
           YLRE+++RRQ+ILKSI EQGKL  EL  AI S  SK  LEDLYLPYKPKRRT+GQIAIEA
Sbjct: 62  YLRELEERRQSILKSIDEQGKLNDELAIAIRSTLSKTELEDLYLPYKPKRRTRGQIAIEA 121

Query: 121 GLEPLADTLWTQPNTDPESEAAKYINAEKGVADSKAALDGARAIVMERIAEDANLLEKIR 180
           GL PLAD LW  P+  PE  AA Y++AEKGV DSKAALDGAR I+MER AEDA LL K+R
Sbjct: 122 GLAPLADQLWQDPSHSPEQLAANYVDAEKGVTDSKAALDGARYILMERFAEDATLLAKVR 181

Query: 181 QHLNRNAEIVSRVIEGKEQAGEKFKDYFDHREPISKAPSHRALAMLRGRNEGFLTLTLNA 240
           ++L +NA +VSRV+EGKE+ G KF+DYF H E +S  PSHRALAM RGRNEG L L+LNA
Sbjct: 182 EYLWKNAHLVSRVLEGKEEEGAKFRDYFTHHESLSSVPSHRALAMFRGRNEGILQLSLNA 241

Query: 241 DPELEESARQSYCETLIAEHYGIHLSQATADAWRKQVISWAWKIKISMHMETELMSAMKE 300
           DP+ +E  R+S+ E +IA+H  + L+ A AD+WRK V+SW W+IK+ +H+ETELM +++E
Sbjct: 242 DPQFDEPPRESHGEQIIADHLNLRLNNAPADSWRKAVVSWTWRIKVLLHLETELMGSVRE 301

Query: 301 RAEIEAIEVFATNLKDLLMAAPAGPRATLGLDPGLRTGCKVAVVDATGKVLATDTIYPHA 360
           RAE EAI VFA NL DLLMAAPAG RAT+GLDPGLRTG KVAVVDATGK++ATDTIYPH 
Sbjct: 302 RAEDEAINVFARNLHDLLMAAPAGMRATMGLDPGLRTGVKVAVVDATGKLVATDTIYPHT 361

Query: 361 PQHQYDRAMQSIALLVKKFNVDLIAIGNGTASRETDAFAADLIKR-GNLKVQKIMVSEAG 419
            Q    +A  ++A L  +  V+L+AIGNGTASRET+ F  D+ K+   +  QK++VSEAG
Sbjct: 362 GQAA--KAASAVAALCTRHQVELVAIGNGTASRETERFFLDVQKQFPQVNAQKVIVSEAG 419

Query: 420 ASVYSASELAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTLL 479
           ASVYSASELAA EFP+LDVS+RGAVSIARRLQDPL+ELVKIDPKSIGVGQYQHDVSQ+ L
Sbjct: 420 ASVYSASELAALEFPDLDVSIRGAVSIARRLQDPLSELVKIDPKSIGVGQYQHDVSQSQL 479

Query: 480 AKRLDAIVEDCVNAVGVDVNTASAALLTRVAGLSAALAQNIVDYRDENGRFESRSALKKV 539
           AK+LDA+VEDCVN VGVD+NTAS  LLTRVAGLS  +AQNIV +RDE+GRF+ R  L KV
Sbjct: 480 AKKLDAVVEDCVNGVGVDLNTASVPLLTRVAGLSKMIAQNIVSWRDEHGRFQDRQQLLKV 539

Query: 540 PRLGPKAFEQCAGFLRIMDGKNPLDASAVHPEAYPVVKTIAEKNSKDLKALIGNTEFLRT 599
            RLGPKAFEQCAGFLRI  G NPLDAS VHPEAYPVV+ I     + L  L+GN   LR 
Sbjct: 540 SRLGPKAFEQCAGFLRINHGDNPLDASTVHPEAYPVVQRILTATRQVLADLMGNASALRN 599

Query: 600 LRAVDYTDENFGVPTVTDIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVS 659
           LRAVD+TDE FGVPTV+DIIKEL+KPGRDPRPEFKTA FAEGI  ++DL  GMVLEG V+
Sbjct: 600 LRAVDFTDERFGVPTVSDIIKELEKPGRDPRPEFKTAQFAEGIETMNDLLPGMVLEGAVT 659

Query: 660 NVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSM 719
           NV NFGAFV+IGVHQDGLVHIS+L+D+FI DP +VVKAGDIVKVKVMEVD+QRKRIAL+M
Sbjct: 660 NVTNFGAFVNIGVHQDGLVHISSLSDKFIDDPHKVVKAGDIVKVKVMEVDLQRKRIALTM 719

Query: 720 RLNDEPGQDNRSQRS----AAPRSGQERRAPRRDEPQGNALGGAMGGAFAAAFAK 770
           RL+++PG D  ++RS     +PR  Q +  P   +P GN+   AMG A AAAF K
Sbjct: 720 RLDEQPG-DTSARRSDSARTSPRQSQSKPRPAPSQPAGNS---AMGDALAAAFGK 770