Pairwise Alignments

Query, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

Subject, 776 a.a., Transcriptional accessory protein from Enterobacter asburiae PDN3

 Score = 1034 bits (2674), Expect = 0.0
 Identities = 531/777 (68%), Positives = 629/777 (80%), Gaps = 7/777 (0%)

Query: 1   MSKAICHQIAQELNVRPEQVIAAVTLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLA 60
           M  ++C  IA ++  R EQV AAV L+D+GNTVPFIARYRKEVTGGLDDTQLRNL++RL 
Sbjct: 2   MKDSLCRIIAGDIQARAEQVEAAVRLLDEGNTVPFIARYRKEVTGGLDDTQLRNLETRLG 61

Query: 61  YLREMDDRRQTILKSIQEQGKLTPELEQAILSADSKNRLEDLYLPYKPKRRTKGQIAIEA 120
           YLRE+++RRQ ILKSI EQGKLT ELE AI    SK  LEDLYLPYKPKRRT+GQIAIEA
Sbjct: 62  YLRELEERRQAILKSIGEQGKLTSELESAINGTLSKTELEDLYLPYKPKRRTRGQIAIEA 121

Query: 121 GLEPLADTLWTQPNTDPESEAAKYINAEKGVADSKAALDGARAIVMERIAEDANLLEKIR 180
           GLEPLAD LW +P+ DPE+EAAK+I+A+KGVAD+KAALDGAR I+MER AEDA LL K+R
Sbjct: 122 GLEPLADLLWNEPSHDPETEAAKFIDADKGVADTKAALDGARYILMERFAEDAALLAKVR 181

Query: 181 QHLNRNAEIVSRVIEGKEQAGEKFKDYFDHREPISKAPSHRALAMLRGRNEGFLTLTLNA 240
            +L +NA IVS V+ GKE+ G KF+DYFDH EPIS APSHRALAM RGRNEG L L+LNA
Sbjct: 182 DYLWKNAHIVSTVVAGKEEEGAKFRDYFDHHEPISTAPSHRALAMFRGRNEGVLQLSLNA 241

Query: 241 DPELEESARQSYCETLIAEHYGIHLSQATADAWRKQVISWAWKIKISMHMETELMSAMKE 300
           DP+ +E  ++S+CE +I +H G+ L+ A AD+WRK V+SW W+IK+ MH+ETELM  ++E
Sbjct: 242 DPQFDEPPKESHCEQIIIDHLGLRLNNAPADSWRKGVVSWTWRIKVLMHLETELMGTVRE 301

Query: 301 RAEIEAIEVFATNLKDLLMAAPAGPRATLGLDPGLRTGCKVAVVDATGKVLATDTIYPHA 360
           RAE EAI VFA NL DLLMAAPAG RAT+GLDPGLRTG KVAVVD TGK++ATDTIYPH 
Sbjct: 302 RAEDEAINVFARNLHDLLMAAPAGLRATMGLDPGLRTGVKVAVVDGTGKLVATDTIYPHT 361

Query: 361 PQHQYDRAMQSIALLVKKFNVDLIAIGNGTASRETDAFAADLIKR-GNLKVQKIMVSEAG 419
            Q    +A   +A L +K+NV+L+AIGNGTASRET+ F  D+ K+   +  QK++VSEAG
Sbjct: 362 GQAA--KAAVVVAALCEKYNVELVAIGNGTASRETERFYLDVQKQFPKVTAQKVIVSEAG 419

Query: 420 ASVYSASELAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTLL 479
           ASVYSASELAA+EFP+LDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQT L
Sbjct: 420 ASVYSASELAAQEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTQL 479

Query: 480 AKRLDAIVEDCVNAVGVDVNTASAALLTRVAGLSAALAQNIVDYRDENGRFESRSALKKV 539
           A++LDA+VEDCVNAVGVD+NTAS  LLTRVAGL+  +AQNIV +RDENG+F++R  L KV
Sbjct: 480 ARKLDAVVEDCVNAVGVDLNTASVPLLTRVAGLTRMMAQNIVAWRDENGQFQNRQQLLKV 539

Query: 540 PRLGPKAFEQCAGFLRIMDGKNPLDASAVHPEAYPVVKTIAEKNSKDLKALIGNTEFLRT 599
            RLGPKAFEQCAGFLRI  G NPLDAS VHPEAYPVV+ I     + LK L+G+   LR 
Sbjct: 540 SRLGPKAFEQCAGFLRINHGDNPLDASTVHPEAYPVVERILAATQQALKDLMGDNSALRN 599

Query: 600 LRAVDYTDENFGVPTVTDIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVS 659
           L+AVD+TD+ FGVPTVTDIIKEL+KPGRDPRPEFKTATFA+G+  ++DL  GMVLEG V+
Sbjct: 600 LKAVDFTDDKFGVPTVTDIIKELEKPGRDPRPEFKTATFADGVETMNDLLPGMVLEGAVT 659

Query: 660 NVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSM 719
           NV NFGAFVDIGVHQDGLVHIS+L D+F+ DP  VVKAGDIVKVKV+EVD+QRKRIAL+M
Sbjct: 660 NVTNFGAFVDIGVHQDGLVHISSLADKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTM 719

Query: 720 RLNDEPGQDNRSQRSAAPRSGQERRAPRRDEPQGN----ALGGAMGGAFAAAFAKAK 772
           RL+++PG  N  +        Q+R A +  +P+G     A   AM  A AAA  K +
Sbjct: 720 RLDEQPGDTNARRGGNGGGREQQRPAAKAAKPRGRDAQPAGNSAMMDALAAAMGKKR 776