Pairwise Alignments

Query, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

Subject, 773 a.a., Protein YhgF from Escherichia coli ECRC101

 Score = 1028 bits (2659), Expect = 0.0
 Identities = 526/777 (67%), Positives = 628/777 (80%), Gaps = 10/777 (1%)

Query: 1   MSKAICHQIAQELNVRPEQVIAAVTLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLA 60
           M+ + C  IA E+  RPEQV AAV L+D+GNTVPFIARYRKE+TGGLDDTQLRNL++RL 
Sbjct: 2   MNDSFCRIIAGEIQARPEQVDAAVRLLDEGNTVPFIARYRKEITGGLDDTQLRNLETRLG 61

Query: 61  YLREMDDRRQTILKSIQEQGKLTPELEQAILSADSKNRLEDLYLPYKPKRRTKGQIAIEA 120
           YLRE+++RRQ ILKSI EQGKLT +L  AI +  SK  LEDLYLPYKPKRRT+GQIAIEA
Sbjct: 62  YLRELEERRQAILKSISEQGKLTDDLANAINATLSKTELEDLYLPYKPKRRTRGQIAIEA 121

Query: 121 GLEPLADTLWTQPNTDPESEAAKYINAEKGVADSKAALDGARAIVMERIAEDANLLEKIR 180
           GLEPLAD LW+ P+  PE  AA+YI+A+KGVAD+KAALDGAR I+MER AEDA LL K+R
Sbjct: 122 GLEPLADLLWSDPSHTPEVAAAQYIDADKGVADTKAALDGARYILMERFAEDAALLAKVR 181

Query: 181 QHLNRNAEIVSRVIEGKEQAGEKFKDYFDHREPISKAPSHRALAMLRGRNEGFLTLTLNA 240
            +L +NA +VS V+ GKE+ G KF+DYFDH EP+S  PSHRALAM RGRNEG L L+LNA
Sbjct: 182 DYLWKNAHLVSTVVSGKEEEGAKFRDYFDHHEPLSTVPSHRALAMFRGRNEGVLQLSLNA 241

Query: 241 DPELEESARQSYCETLIAEHYGIHLSQATADAWRKQVISWAWKIKISMHMETELMSAMKE 300
           DP+ +E  ++SYCE +I +H G+ L+ A AD+WRK V+SW W+IK+ MH+ETELM  ++E
Sbjct: 242 DPQFDEPPKESYCEQIITDHLGLRLNNAPADSWRKGVVSWTWRIKVLMHLETELMGTVRE 301

Query: 301 RAEIEAIEVFATNLKDLLMAAPAGPRATLGLDPGLRTGCKVAVVDATGKVLATDTIYPHA 360
           RAE EAI VFA NL DLLMAAPAG RAT+GLDPGLRTG KVAVVDATGK++ATDTIYPH 
Sbjct: 302 RAENEAINVFARNLHDLLMAAPAGLRATMGLDPGLRTGVKVAVVDATGKLVATDTIYPHT 361

Query: 361 PQHQYDRAMQSIALLVKKFNVDLIAIGNGTASRETDAFAADLIKR-GNLKVQKIMVSEAG 419
            Q    +A  ++A L +K NV+L+AIGNGTASRET+ F  D+ K+   +  QK++VSEAG
Sbjct: 362 GQAA--KAAMTVAALCEKHNVELVAIGNGTASRETERFYLDVQKQFPKVTAQKVIVSEAG 419

Query: 420 ASVYSASELAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTLL 479
           ASVYSASELAA+EFP+LDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQT L
Sbjct: 420 ASVYSASELAAQEFPDLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTQL 479

Query: 480 AKRLDAIVEDCVNAVGVDVNTASAALLTRVAGLSAALAQNIVDYRDENGRFESRSALKKV 539
           A++LDA+VEDCVNAVGVD+NTAS  LLTRVAGL+  +AQNIV +RDENG+F++R  L KV
Sbjct: 480 ARKLDAVVEDCVNAVGVDLNTASVPLLTRVAGLTRMMAQNIVAWRDENGQFQNRQQLLKV 539

Query: 540 PRLGPKAFEQCAGFLRIMDGKNPLDASAVHPEAYPVVKTIAEKNSKDLKALIGNTEFLRT 599
            RLGPKAFEQCAGFLRI  G NPLDAS VHPEAYPVV+ I     + LK L+GN+  LR 
Sbjct: 540 SRLGPKAFEQCAGFLRINHGDNPLDASTVHPEAYPVVERILAATQQALKDLMGNSSELRN 599

Query: 600 LRAVDYTDENFGVPTVTDIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVS 659
           L+A D+TDE FGVPTVTDIIKEL+KPGRDPRPEFKTA FA+G+  ++DL+ GM+LEG V+
Sbjct: 600 LKASDFTDEKFGVPTVTDIIKELEKPGRDPRPEFKTAQFADGVETMNDLQPGMILEGAVT 659

Query: 660 NVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSM 719
           NV NFGAFVDIGVHQDGLVHIS+L+++F+ DP  VVKAGDIVKVKV+EVD+QRKRIAL+M
Sbjct: 660 NVTNFGAFVDIGVHQDGLVHISSLSNKFVEDPHTVVKAGDIVKVKVLEVDLQRKRIALTM 719

Query: 720 RLNDEPGQDNRSQRSAAPRSGQERRAP----RRDEPQGNALGGAMGGAFAAAFAKAK 772
           RL+++PG+ N  +     R    R A     R  +P GN+   AM  A AAA  K +
Sbjct: 720 RLDEQPGETNSRRGGGNDRPQNNRPAAKPRGREAQPAGNS---AMMDALAAAMGKKR 773