Pairwise Alignments

Query, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

Subject, 778 a.a., RNA-binding transcriptional accessory protein from Dickeya dianthicola 67-19

 Score = 1009 bits (2609), Expect = 0.0
 Identities = 519/782 (66%), Positives = 621/782 (79%), Gaps = 17/782 (2%)

Query: 1   MSKAICHQIAQELNVRPEQVIAAVTLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLA 60
           M+ A+   IA EL  R EQV AA+ L+D+GNTVPFIARYRKEVTGGLDDTQLR L+SRL+
Sbjct: 1   MTNALSQIIASELQARNEQVSAAIQLLDEGNTVPFIARYRKEVTGGLDDTQLRQLESRLS 60

Query: 61  YLREMDDRRQTILKSIQEQGKLTPELEQAILSADSKNRLEDLYLPYKPKRRTKGQIAIEA 120
           YLRE+++RRQTILKSI EQGKLT  L  +I +  SK  LEDLYLPYKPKRRT+GQIAIEA
Sbjct: 61  YLRELEERRQTILKSIDEQGKLTDALATSINTTLSKTELEDLYLPYKPKRRTRGQIAIEA 120

Query: 121 GLEPLADTLWTQPNTDPESEAAKYINAEKGVADSKAALDGARAIVMERIAEDANLLEKIR 180
           GLEPLAD+LW  P+  PE  A  Y+NA+ GVAD KAALDGAR I+MER AEDA LL K+R
Sbjct: 121 GLEPLADSLWNDPSQTPELVANAYVNADNGVADVKAALDGARYILMERFAEDAALLAKVR 180

Query: 181 QHLNRNAEIVSRVIEGKEQAGEKFKDYFDHREPISKAPSHRALAMLRGRNEGFLTLTLNA 240
            +L +NA +VSRV+EGKE+ G KF+DYFDHRE +S+ PSHRALAM RGRNEG L L+LNA
Sbjct: 181 DYLWKNAHLVSRVVEGKEEDGAKFRDYFDHRELLSQVPSHRALAMFRGRNEGMLQLSLNA 240

Query: 241 DPELEESARQSYCETLIAEHYGIHLSQATADAWRKQVISWAWKIKISMHMETELMSAMKE 300
           DP+ +E  ++S+CE +I +H  + L  A AD WR+ V++W W+IK+ +H+ETELM +++E
Sbjct: 241 DPQFDEPPKESHCEHIIVDHLRLCLGNAPADGWRRAVVNWTWRIKVLLHLETELMGSVRE 300

Query: 301 RAEIEAIEVFATNLKDLLMAAPAGPRATLGLDPGLRTGCKVAVVDATGKVLATDTIYPHA 360
           +AE EAI VFA NL DLLMAAPAG RAT+GLDPGLRTG KVAVVDATGK++ATDTIYPH 
Sbjct: 301 KAEDEAINVFARNLHDLLMAAPAGMRATMGLDPGLRTGVKVAVVDATGKLVATDTIYPHT 360

Query: 361 PQHQYDRAMQSIALLVKKFNVDLIAIGNGTASRETDAFAADLIKR-GNLKVQKIMVSEAG 419
            Q    +A   +A L  +  V+L+AIGNGTASRET+ F  D  K+  ++K QK++VSEAG
Sbjct: 361 GQAA--KAATVVAALCIRHQVELVAIGNGTASRETERFFLDTQKQFPDVKAQKVIVSEAG 418

Query: 420 ASVYSASELAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTLL 479
           ASVYSASELAA EFP LDVSLRGAVSIARRLQDPL+ELVKIDPKSIGVGQYQHDVSQT L
Sbjct: 419 ASVYSASELAALEFPGLDVSLRGAVSIARRLQDPLSELVKIDPKSIGVGQYQHDVSQTQL 478

Query: 480 AKRLDAIVEDCVNAVGVDVNTASAALLTRVAGLSAALAQNIVDYRDENGRFESRSALKKV 539
           AK+LDA+VEDCVNAVGVD+NTAS  LLTRVAGL+  +AQNIV +RDENGRF +R  L KV
Sbjct: 479 AKKLDAVVEDCVNAVGVDLNTASVPLLTRVAGLTRLMAQNIVSWRDENGRFNNRDQLLKV 538

Query: 540 PRLGPKAFEQCAGFLRIMDGKNPLDASAVHPEAYPVVKTIAEKNSKDLKALIGNTEFLRT 599
            RLGPKAFEQCAGFLRI  G NPLDAS VHPE YPVV+ I     + L+ L+GN+  LRT
Sbjct: 539 SRLGPKAFEQCAGFLRINHGDNPLDASTVHPETYPVVERILAATEQKLQDLMGNSSALRT 598

Query: 600 LRAVDYTDENFGVPTVTDIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVS 659
           L+   +TD+ FGVPTVTDIIKEL+KPGRDPRPEFKTA+FA+G+  ++DL  GM+LEG V+
Sbjct: 599 LKPASFTDDRFGVPTVTDIIKELEKPGRDPRPEFKTASFADGVETLNDLLPGMILEGAVT 658

Query: 660 NVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSM 719
           NV NFGAFVDIGVHQDGLVHIS+L DRF+ DP +VVKAGDIVKVKV+EVD+QRKRIAL+M
Sbjct: 659 NVTNFGAFVDIGVHQDGLVHISSLADRFVEDPHQVVKAGDIVKVKVLEVDLQRKRIALTM 718

Query: 720 RLNDEPGQ-----------DNRSQRSAAPRSGQERRAPRRDEPQGNALGGAMGGAFAAAF 768
           RL+++PG+           DN ++ S  P++G + R  +   P GN+   AM  A AAA 
Sbjct: 719 RLDEQPGEGNSRRDGGRERDNGNKASRPPQAGNKARPRQSSTPAGNS---AMSDALAAAL 775

Query: 769 AK 770
            K
Sbjct: 776 KK 777