Pairwise Alignments

Query, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

Subject, 781 a.a., RNA-binding transcriptional accessory protein from Dickeya dadantii 3937

 Score = 1011 bits (2614), Expect = 0.0
 Identities = 518/783 (66%), Positives = 620/783 (79%), Gaps = 16/783 (2%)

Query: 1   MSKAICHQIAQELNVRPEQVIAAVTLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLA 60
           M+ A+   IA EL  R EQV AA+ L+D+GNTVPFIARYRKEVTGGLDDTQLR L++RL+
Sbjct: 1   MTNALSQIIASELQARNEQVSAAIQLLDEGNTVPFIARYRKEVTGGLDDTQLRQLETRLS 60

Query: 61  YLREMDDRRQTILKSIQEQGKLTPELEQAILSADSKNRLEDLYLPYKPKRRTKGQIAIEA 120
           YLRE+++RRQTILKSI+EQGKLT  L  +I +  SK  LEDLYLPYKPKRRT+GQIAIEA
Sbjct: 61  YLRELEERRQTILKSIEEQGKLTDALATSINTTLSKTELEDLYLPYKPKRRTRGQIAIEA 120

Query: 121 GLEPLADTLWTQPNTDPESEAAKYINAEKGVADSKAALDGARAIVMERIAEDANLLEKIR 180
           GLEPLAD+LW  P+  PE  A  YINA+ GVAD KAALDGAR I+MER AEDA LL K+R
Sbjct: 121 GLEPLADSLWNDPSQTPELVAEAYINADNGVADVKAALDGARYILMERFAEDAALLAKVR 180

Query: 181 QHLNRNAEIVSRVIEGKEQAGEKFKDYFDHREPISKAPSHRALAMLRGRNEGFLTLTLNA 240
            +L +NA +VSRV+EGKE+ G KF+DYFDH EP+S+ PSHRALAM RGRNEG L L+LNA
Sbjct: 181 DYLWKNAHLVSRVVEGKEEDGAKFRDYFDHHEPLSQVPSHRALAMFRGRNEGVLQLSLNA 240

Query: 241 DPELEESARQSYCETLIAEHYGIHLSQATADAWRKQVISWAWKIKISMHMETELMSAMKE 300
           DP+ +E  ++S+CE +I EH G+ L  A AD WR+ V++W W+IK+ +H+ETELM +++E
Sbjct: 241 DPQFDEPPKESHCEHIIIEHLGLRLGNAPADGWRRAVVNWTWRIKVLLHLETELMGSVRE 300

Query: 301 RAEIEAIEVFATNLKDLLMAAPAGPRATLGLDPGLRTGCKVAVVDATGKVLATDTIYPHA 360
           +AE EAI VFA NL DLLMAAPAG RAT+GLDPGLRTG KVAVVDATGK++ATDTIYPH 
Sbjct: 301 KAEDEAINVFARNLHDLLMAAPAGMRATMGLDPGLRTGVKVAVVDATGKLVATDTIYPHT 360

Query: 361 PQHQYDRAMQSIALLVKKFNVDLIAIGNGTASRETDAFAADLIKR-GNLKVQKIMVSEAG 419
            Q    +A   +A L  K  V+L+AIGNGTASRET+ F  D  K+  ++K QK++VSEAG
Sbjct: 361 GQTA--KAATVVAALCIKHQVELVAIGNGTASRETERFFLDTQKQFPDVKAQKVIVSEAG 418

Query: 420 ASVYSASELAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTLL 479
           ASVYSASELAA EFP+LDVSLRGAVSIARRLQDPL+ELVKIDPKSIGVGQYQHDVSQT L
Sbjct: 419 ASVYSASELAALEFPDLDVSLRGAVSIARRLQDPLSELVKIDPKSIGVGQYQHDVSQTQL 478

Query: 480 AKRLDAIVEDCVNAVGVDVNTASAALLTRVAGLSAALAQNIVDYRDENGRFESRSALKKV 539
           AK+LDA+VEDCVN VGVD+NTAS  LLTRVAGL+  +AQNIV +RDENGRF +R  L KV
Sbjct: 479 AKKLDAVVEDCVNGVGVDLNTASVPLLTRVAGLTRLMAQNIVSWRDENGRFNNRDQLLKV 538

Query: 540 PRLGPKAFEQCAGFLRIMDGKNPLDASAVHPEAYPVVKTIAEKNSKDLKALIGNTEFLRT 599
            RLGPKAFEQCAGFLRI  G NPLDAS VHPEAYPVV+ I     + L+ L+GN   LR+
Sbjct: 539 SRLGPKAFEQCAGFLRINHGDNPLDASTVHPEAYPVVERILAATEQKLQDLMGNASALRS 598

Query: 600 LRAVDYTDENFGVPTVTDIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVS 659
           L+   +TD+ FGVPTVTDIIKEL+KPGRDPRPEFKTA+FA+G+  ++DL  GM+LEG V+
Sbjct: 599 LKPASFTDDRFGVPTVTDIIKELEKPGRDPRPEFKTASFADGVETLNDLLPGMILEGAVT 658

Query: 660 NVANFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSM 719
           NV NFGAFVDIGVHQDGLVHIS+L+DRF+ DP +VVKAGDIVKVKV+EVD+QRKRIAL+M
Sbjct: 659 NVTNFGAFVDIGVHQDGLVHISSLSDRFVEDPHQVVKAGDIVKVKVLEVDLQRKRIALTM 718

Query: 720 RLNDEPGQ------------DNRSQRSAAPRSGQERRAPRRDEPQGNALGGAMGGAFAAA 767
           RL+++PG+            DN +  ++ P     +  PR+     +    AM  A AAA
Sbjct: 719 RLDEQPGEGNSRRGSGGRERDNGNNNASRPSQAGNKARPRQSNTPASG-NSAMSDALAAA 777

Query: 768 FAK 770
           F K
Sbjct: 778 FKK 780