Pairwise Alignments

Query, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

Subject, 784 a.a., Protein YhgF from Azospirillum sp. SherDot2

 Score =  901 bits (2328), Expect = 0.0
 Identities = 473/780 (60%), Positives = 575/780 (73%), Gaps = 14/780 (1%)

Query: 4   AICHQIAQELNVRPEQVIAAVTLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLAYLR 63
           +I  +IA EL+VR  QV +A+ ++D+G+TVPFIARYRKE TGGLDDTQLR L+ RL YLR
Sbjct: 3   SISQRIADELSVRESQVASAIAMLDEGSTVPFIARYRKEATGGLDDTQLRTLEERLGYLR 62

Query: 64  EMDDRRQTILKSIQEQGKLTPELEQAILSADSKNRLEDLYLPYKPKRRTKGQIAIEAGLE 123
           E++DRR +IL +IQ+QGKLTPELE+ I  AD+K RLEDLYLPYK KRRTK QIA EAGLE
Sbjct: 63  ELEDRRASILSTIQDQGKLTPELERQIKQADTKTRLEDLYLPYKQKRRTKAQIAREAGLE 122

Query: 124 PLADTLWTQPNTDPESEAAKYINAEKGVADSKAALDGARAIVMERIAEDANLLEKIRQHL 183
           PLAD L   P   P+ EAA +++A+KGVAD KAALDGAR I++ER  EDA L+ ++R  +
Sbjct: 123 PLADALLADPKKQPDMEAAAFVSADKGVADVKAALDGARHILVERFGEDAELVGRLRTAM 182

Query: 184 NRNAEIVSRVIEGKEQAGEKFKDYFDHREPISKAPSHRALAMLRGRNEGFLTLTLNADPE 243
                + S+VIE K+  G KF DYFD  E  SK PSHRALA+ RGR +G L + L+   E
Sbjct: 183 ADKGVVTSKVIEEKKAEGAKFSDYFDFSENWSKLPSHRALALFRGRAQGVLDIRLDLPVE 242

Query: 244 LEESARQSYCETLIAEHYGIHLSQATADAWRKQVISWAWKIKISMHMETELMSAMKERAE 303
                +    E  IA H GI      AD W   V+ W WK+KI  H+ET+LM +++ERAE
Sbjct: 243 ---EGQPHPAEGTIAVHTGIRDQGRPADKWLSDVVRWTWKLKIGPHIETDLMGSLRERAE 299

Query: 304 IEAIEVFATNLKDLLMAAPAGPRATLGLDPGLRTGCKVAVVDATGKVLATDTIYPHAPQH 363
            EAI VFA NL DLL+AAPAG R T+GLDPG+RTG KVAVVDATGK++ T TIYPH P++
Sbjct: 300 DEAIRVFARNLHDLLLAAPAGQRVTIGLDPGIRTGVKVAVVDATGKLVETTTIYPHPPRN 359

Query: 364 QYDRAMQSIALLVKKFNVDLIAIGNGTASRETDAFAADLIKRG-NLKVQKIMVSEAGASV 422
            +D ++  +A L  +   +LI+IGNGTASRETD  AADL+KR   L + K++VSEAGASV
Sbjct: 360 DWDGSLAVLAALAARHKAELISIGNGTASRETDKLAADLMKRHPELSLTKLVVSEAGASV 419

Query: 423 YSASELAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTLLAKR 482
           YSASE AA EFP LDVSLRGAVSIARRLQDPLAELVKI+PKSIGVGQYQHDV+   LA+ 
Sbjct: 420 YSASETAAHEFPTLDVSLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVAGGKLARS 479

Query: 483 LDAIVEDCVNAVGVDVNTASAALLTRVAGLSAALAQNIVDYRDENGRFESRSALKKVPRL 542
           LDA+VEDCVNAVGVD+NTAS  LLTRV+GL+  +A+NIV++RD NG F SR  L  V RL
Sbjct: 480 LDAVVEDCVNAVGVDLNTASIPLLTRVSGLNETIARNIVEHRDRNGAFRSRKQLLDVARL 539

Query: 543 GPKAFEQCAGFLRIMDGKNPLDASAVHPEAYPVVKTIAEKNSKDLKALIGNTEFLRTLRA 602
           GPK FEQ AGFLRI D +NPLD SAVHPEAYPVV+ I +   +DL ++IG+  FLR L A
Sbjct: 540 GPKTFEQAAGFLRIRDSENPLDGSAVHPEAYPVVQRIVKTTGRDLGSVIGDARFLRGLNA 599

Query: 603 VDYTDENFGVPTVTDIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVSNVA 662
            ++TDE FGVPTV DIIKEL+KPGRDPRPEFKTATF EG+ E+  L+ GM+LEGVV+NV 
Sbjct: 600 EEFTDERFGVPTVEDIIKELEKPGRDPRPEFKTATFKEGVEELKHLQPGMMLEGVVTNVT 659

Query: 663 NFGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSMRLN 722
            FGAFVDIGVHQDGLVHIS L + F+ DP  VVKAGD+VKVKV+EVD+ RKRIAL+MR+ 
Sbjct: 660 AFGAFVDIGVHQDGLVHISQLANSFVKDPHTVVKAGDVVKVKVLEVDIPRKRIALTMRMG 719

Query: 723 DEPGQDNRSQRSAAPRSGQERRAPRRD-EPQGNALGGA---------MGGAFAAAFAKAK 772
           +E  +  R +       G  R   ++D  P   A   A         +  AFA AFA+A+
Sbjct: 720 EEAPRPARREEQRRDERGPGRPPQQQDRRPAAPAAKAAPKPAKAPEPVNSAFAEAFARAQ 779