Pairwise Alignments

Query, 773 a.a., RNA-binding transcriptional accessory protein from Vibrio cholerae E7946 ATCC 55056

Subject, 782 a.a., hypothetical protein from Alteromonas macleodii MIT1002

 Score = 1003 bits (2594), Expect = 0.0
 Identities = 516/782 (65%), Positives = 623/782 (79%), Gaps = 14/782 (1%)

Query: 5   ICHQIAQELNVRPEQVIAAVTLIDDGNTVPFIARYRKEVTGGLDDTQLRNLDSRLAYLRE 64
           I ++IA EL+V+P QV AAV L+D+G+TVPFIARYRKEVT GLDDTQLR L+ RL YLRE
Sbjct: 2   IINKIADELSVQPSQVTAAVKLLDEGSTVPFIARYRKEVTQGLDDTQLRTLEQRLTYLRE 61

Query: 65  MDDRRQTILKSIQEQGKLTPELEQAILSADSKNRLEDLYLPYKPKRRTKGQIAIEAGLEP 124
           +++RR  ILKSI+EQGKLT EL+ +I SADSK  LEDLYLPYKP+RRTKGQIAIEAGLEP
Sbjct: 62  LEERRDVILKSIEEQGKLTDELKSSITSADSKTTLEDLYLPYKPRRRTKGQIAIEAGLEP 121

Query: 125 LADTLWTQPNTDPESEAAKYINAEKGVADSKAALDGARAIVMERIAEDANLLEKIRQHLN 184
           LADTL++ P+TD ES A++Y+NA+ G+AD+KAAL+GAR I+MER AEDA LL K+R++L 
Sbjct: 122 LADTLFSTPDTDAESAASEYVNADSGIADTKAALEGARYILMERFAEDATLLAKVRKYLT 181

Query: 185 RNAEIVSRVIEGKEQAGEKFKDYFDHREPISKAPSHRALAMLRGRNEGFLTLTLNADPEL 244
            NA + S V+ GKEQ   K+KDYF+H E     PSHRALAM RGRNEG L + L+ADP+ 
Sbjct: 182 ENAYVKSTVVSGKEQEAAKYKDYFEHSEKYKNVPSHRALAMFRGRNEGMLHIQLDADPQS 241

Query: 245 EESARQSYCETLIAEHYGIHLSQATADAWRKQVISWAWKIKISMHMETELMSAMKERAEI 304
           E++   S+CE +IA HY I      AD +  QV+ W WKIKI +HMETEL SA++ERAE 
Sbjct: 242 EDNG-PSHCEHIIASHYDIMHRGRGADDFLAQVVQWTWKIKIGLHMETELFSALRERAEE 300

Query: 305 EAIEVFATNLKDLLMAAPAGPRATLGLDPGLRTGCKVAVVDATGKVLATDTIYPHAPQHQ 364
           EAIEVFA NL DLLMAAPAG + T+GLDPGLRTG KVAVVD+TGKV+AT+TI+PHAPQ+Q
Sbjct: 301 EAIEVFAKNLNDLLMAAPAGAKTTMGLDPGLRTGVKVAVVDSTGKVVATNTIFPHAPQNQ 360

Query: 365 YDRAMQSIALLVKKFNVDLIAIGNGTASRETDAFAADLIKRGN-LKVQKIMVSEAGASVY 423
           +D++++++  L K++ VDLI+IGNGT SRETD    +++K  + L  QKIMVSEAGASVY
Sbjct: 361 WDKSIRTLTTLCKQYKVDLISIGNGTGSRETDKLVGEMLKNNSELTAQKIMVSEAGASVY 420

Query: 424 SASELAAKEFPNLDVSLRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQTLLAKRL 483
           SASELA+KE P+LDVS+RGAVSIARRLQDPLAELVKI+PK+IGVGQYQHDVSQ+ L K L
Sbjct: 421 SASELASKELPDLDVSIRGAVSIARRLQDPLAELVKIEPKAIGVGQYQHDVSQSQLGKSL 480

Query: 484 DAIVEDCVNAVGVDVNTASAALLTRVAGLSAALAQNIVDYRDENGRFESRSALKKVPRLG 543
           D ++EDCVNAVGVD+NTAS ALL+ V+GL+  LA NIV++RD NG F  R AL KV RLG
Sbjct: 481 DRVIEDCVNAVGVDLNTASPALLSYVSGLNKTLAHNIVNFRDTNGAFPDRKALLKVERLG 540

Query: 544 PKAFEQCAGFLRIMDGKNPLDASAVHPEAYPVVKTIAEKNSKDLKALIGNTEFLRTLRAV 603
           PKAFEQ AGFLRI+DG NPLDASAVHPEAYPVV  I +  +  +  +IGNTE L++L   
Sbjct: 541 PKAFEQAAGFLRIVDGTNPLDASAVHPEAYPVVDKIVDTTAVAVNDIIGNTELLKSLSPD 600

Query: 604 DYTDENFGVPTVTDIIKELDKPGRDPRPEFKTATFAEGIHEVSDLEVGMVLEGVVSNVAN 663
            +T + FG+PTV DI+KELDKPGRDPRPEFKTA F EG+  ++DL+ GM+LEGVVSNVAN
Sbjct: 601 TFTSDAFGLPTVKDILKELDKPGRDPRPEFKTAAFKEGVETINDLKPGMILEGVVSNVAN 660

Query: 664 FGAFVDIGVHQDGLVHISALTDRFISDPREVVKAGDIVKVKVMEVDVQRKRIALSMRLND 723
           FGAFVD+GVHQDGLVHISALT++FISDPREVVKAGDIVKVKV+EVDV RKRI+ +MRL+D
Sbjct: 661 FGAFVDVGVHQDGLVHISALTNKFISDPREVVKAGDIVKVKVLEVDVPRKRISFTMRLDD 720

Query: 724 EPGQDNRSQRSAA---PRSGQERRAPRRDEPQGNALGG---------AMGGAFAAAFAKA 771
            P Q N +    A   P+S    RA  +  P+ N  GG         AMG AFA AFAKA
Sbjct: 721 TPNQSNNAGGKPAAGKPQSKGAGRANAKANPRSNQGGGNRNSQPQNSAMGNAFADAFAKA 780

Query: 772 KK 773
           KK
Sbjct: 781 KK 782