Pairwise Alignments

Query, 240 a.a., two-component system response regulator OmpR from Vibrio cholerae E7946 ATCC 55056

Subject, 241 a.a., DNA-binding response regulator from Magnetospirillum magneticum AMB-1

 Score =  212 bits (540), Expect = 5e-60
 Identities = 116/235 (49%), Positives = 158/235 (67%), Gaps = 5/235 (2%)

Query: 4   NHKVLVVDDDARLRALLERYLSEQGFQVRSVANGEQMDRLLTRENFHLMVLDLMLPGEDG 63
           N  +LVVDDD  +R LL +++   G +V +  +G +M R+L      L+VLDLMLPGEDG
Sbjct: 5   NPHILVVDDDREIRDLLTKFMMRHGLRVSAAKDGIEMARVLDERRIDLVVLDLMLPGEDG 64

Query: 64  LSICRRLRNSNNMIPILMLTAKGDEIDRIVGLEVGADDYLPKPFNPRELLARIKAVLRR- 122
           LS+CRRLR +   +PI+MLTA G++ DRIVGLE+GADDY+ KPFNPRELLARIKAVLRR 
Sbjct: 65  LSLCRRLRETRAGLPIIMLTAMGEDTDRIVGLEMGADDYVAKPFNPRELLARIKAVLRRT 124

Query: 123 -QVIEAPGAPSAEETIIEFGEFRLNLGTREMFRGEEAM-PLTSGEFAVLKALVTNAREPL 180
               EAP      +    F  + L+L TR++   +  M  L++GEF +L+  V + R  L
Sbjct: 125 QTAEEAPAKRGGAKAC--FLGWTLDLATRDLHSPDGVMVALSAGEFGLLQVFVEHPRRVL 182

Query: 181 SRDKLMNMARGREYSAMERSIDVQISRLRRMLEVDPSKPRYIQTVWGLGYVFVPD 235
           SRD+L++ ARGR     +RSID+Q+SRLR+ +  D   P+ I+TV G GY+F P+
Sbjct: 183 SRDQLLDFARGRSAVPFDRSIDIQVSRLRKRIGDDARDPQIIKTVRGGGYLFTPE 237