Pairwise Alignments

Query, 209 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 224 a.a., Transcriptional regulatory protein DegU from Xanthobacter sp. DMC5

 Score =  187 bits (476), Expect = 1e-52
 Identities = 99/206 (48%), Positives = 145/206 (70%), Gaps = 3/206 (1%)

Query: 7   IIIADDHPLFRNALFQSVHMAISGANLLEADSLDALLTLLNKESEPDLLLLDLKMPGANG 66
           ++IADDHPLFR AL ++V    + A + E  + D L  LL ++ + DL+LLDL MPGA G
Sbjct: 11  LVIADDHPLFRGALREAVLGRSADARIEEVGTFDDLTALLERDQDFDLILLDLTMPGARG 70

Query: 67  MSGLIHLRSEYPDLPIVVISASEEPSVVSQVKSHGAFGFIPKSSDMRSLIAALNQVLNGE 126
            SGLI+LR++Y  +P+VV+S +EEP+V+ +    GA GFIPKS  + ++  A+ QVL GE
Sbjct: 71  FSGLIYLRAQYMAIPVVVVSGNEEPAVIRRCLDLGASGFIPKSMSVGNMRDAVAQVLKGE 130

Query: 127 PYFPAHLLVDGFVGND---LAEKVAALTPQQYKVLGMLSDGLLNKQIAYELNVSEATIKA 183
            + P  + V      +   +  +++ LTPQQ +VL ML++G LNKQIAYEL+VSEAT+KA
Sbjct: 131 TFLPPDINVTTKADAETDAIIARLSTLTPQQVRVLMMLAEGRLNKQIAYELSVSEATVKA 190

Query: 184 HMTAIFRKLGVKNRTQAVILLKEMSE 209
           H++AI +KLGV++RTQAVI + ++ +
Sbjct: 191 HVSAILQKLGVESRTQAVIAVSKVEQ 216