Pairwise Alignments

Query, 158 a.a., tRNA (uridine(34)/cytosine(34)/5- carboxymethylaminomethyluridine(34)-2'-O)- methyltransferase TrmL from Vibrio cholerae E7946 ATCC 55056

Subject, 157 a.a., predicted rRNA methylase (NCBI) from Escherichia coli BW25113

 Score =  204 bits (520), Expect = 4e-58
 Identities = 96/157 (61%), Positives = 122/157 (77%), Gaps = 4/157 (2%)

Query: 1   MFDIALYEPEIAPNTGNIIRLCANCGANLHLIEPLGFDLEEKKVRRAGLDYHDLARVTRH 60
           M +I LYEPEI PNTGNIIRLCAN G  LH+IEP+GF  ++K++RRAGLDYH+   VTRH
Sbjct: 1   MLNIVLYEPEIPPNTGNIIRLCANTGFRLHIIEPMGFAWDDKRLRRAGLDYHEFTAVTRH 60

Query: 61  KDYAAFIEYLQRERGSFRLFACTTKTTQHHVDAQFQQGDVLLFGPETRGLPAELIASLPA 120
            DY AF+E    +R    LFA TTK T  H    +Q GD L+FGPETRGLPA ++ +LPA
Sbjct: 61  HDYRAFLEAENPQR----LFALTTKGTPAHSAVSYQDGDYLMFGPETRGLPASILDALPA 116

Query: 121 EQRIRIPMMPEARSLNLSNAVAIIAFEAWRQMGFDGA 157
           EQ+IRIPM+P++RS+NLSNAV+++ +EAWRQ+G+ GA
Sbjct: 117 EQKIRIPMVPDSRSMNLSNAVSVVVYEAWRQLGYPGA 153