Pairwise Alignments

Query, 228 a.a., DNA-binding response regulator from Vibrio cholerae E7946 ATCC 55056

Subject, 240 a.a., Transcriptional regulatory protein OmpR from Xanthobacter sp. DMC5

 Score =  158 bits (399), Expect = 1e-43
 Identities = 89/225 (39%), Positives = 135/225 (60%), Gaps = 8/225 (3%)

Query: 3   HILLIDDDTELTSLLTEVLQYEGFEISQANDG-EAGLAAVSDEIDLILLDVMMPKLNGME 61
           HIL++DDD E+  LL+  L  +GF ++ A DG E      +  ID ++LD+M+P  +G++
Sbjct: 7   HILVVDDDLEIRKLLSRYLAAQGFRVTAAGDGREMDEKLTTQRIDFVVLDLMLPDASGLD 66

Query: 62  TLKRLREKWATPVLMLTAKGEEIDRVIGLELGADDYLPKPFSDRELLARIRAILRRTQNG 121
             + LR +   PV++LTA  E++DR+IGLE+GADDYL KPF+ REL+ARIRA+LRRT   
Sbjct: 67  LCRALRARSRVPVILLTALKEDVDRIIGLEIGADDYLGKPFNPRELVARIRAVLRRT--S 124

Query: 122 LTPKNSDVIECQDIQVYPGKQE----AYCQGQLLELTTTEFALLTHFVQSPGATLTKEML 177
           +T   S  +       +  + +        G  + LT  EF LL  F++ PG  L+++ L
Sbjct: 125 VTDPTSSAVRAYGFAGFRAEPDLRRVTAADGSEVPLTGAEFDLLMAFLERPGRILSRDQL 184

Query: 178 SIEVLGKHLAAFDRAIDMHVSNLRKKLPERPDGKARIKTLRGRGY 222
                G+    FDR++D+ VS LR+KL ++   +  +KTLR  GY
Sbjct: 185 LDITRGREAGPFDRSVDVLVSRLRRKLGDQGAFQI-LKTLRNGGY 228