Pairwise Alignments

Query, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

Subject, 1169 a.a., Transcription-repair-coupling factor from Xanthobacter sp. DMC5

 Score = 53.9 bits (128), Expect = 5e-11
 Identities = 47/155 (30%), Positives = 68/155 (43%), Gaps = 15/155 (9%)

Query: 222 LLEGVTGSGKTEVYLNLITPVLARGEQALVLVPEIGLTPQTINRFRQRFN-VPVEVMHSA 280
           L+ G  G GKTEV L     V   G+Q  V+VP   L  Q    F  RF+ +PV V  ++
Sbjct: 644 LICGDVGFGKTEVALRAAFAVALSGKQVAVVVPTTLLARQHFKTFSDRFHGLPVNVAQAS 703

Query: 281 --LNDTERLNAWLAARDKVAGIVIGTRSAL--LTPFAKLGIIIVDEEHDSSYKQQDSLRY 336
             +   +         D    IV+GT + L     F  LG++IVDEE       ++ L+ 
Sbjct: 704 RMVTGKDLTAVKKGISDGTVDIVVGTHALLGKAISFKDLGLVIVDEEQHFGVSHKERLKQ 763

Query: 337 HARDVAVMRAHLENIPIVLGSATPALETLHNALSG 371
              +V V+            +ATP   TL  A++G
Sbjct: 764 LRAEVHVLTL----------TATPIPRTLQLAMTG 788



 Score = 33.5 bits (75), Expect = 6e-05
 Identities = 24/72 (33%), Positives = 36/72 (50%), Gaps = 15/72 (20%)

Query: 520 GSLESALTAIRKGEYQILIGTQMLAKGHHFPDVT--LVALLDVDGSLYSSDFRASERLAQ 577
           G+LE  +TA   G+Y +L+ T ++  G   P+    +V   D+ G            LAQ
Sbjct: 867 GALEDIMTAFYDGQYDVLLSTTIVESGLDVPNANTLIVHRADMFG------------LAQ 914

Query: 578 LFIQVAGRAGRA 589
           L+ Q+ GR GRA
Sbjct: 915 LY-QLRGRVGRA 925