Pairwise Alignments

Query, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

Subject, 739 a.a., primosomal protein N' from Pseudomonas simiae WCS417

 Score =  667 bits (1722), Expect = 0.0
 Identities = 363/740 (49%), Positives = 475/740 (64%), Gaps = 9/740 (1%)

Query: 1   MRPSIARVCLPVPLDKSFDYLIPAHLFPVL---GGRVQVPFGRQTLVGIVQSLTHQSDFP 57
           M  +I R+ LP PL + FDY  PA +       G RV+ PFGR+ ++GI+  +   S+ P
Sbjct: 1   MPDAILRLALPSPLRRLFDYRAPAGVLRAQLQPGMRVRAPFGRREMIGILVEVADHSEVP 60

Query: 58  IEQLKSVQAVLDDAPVWPDKLQSLLHWCSQFYHYPLGETYANALPGALRKGKAAELTSHK 117
            E+LK   A+LD  P  P  L  L  W +Q+Y + LG+T + ALP  LR+G+ AE    +
Sbjct: 61  AEKLKPALAMLDATPPLPPALFKLCLWTAQYYQHSLGDTLSWALPVLLRQGELAEARQER 120

Query: 118 EWRLTALGQEQLMQGVKRGAVKQAQVLHLLQHG-ALSHQTLLDEEVSSTTLKALVEKGWI 176
            W +   G       + R   ++  +  L QH   ++HQ L    +S  +L  L+ KG +
Sbjct: 121 FWSMVP-GARLDDPRIARAPRQREALATLAQHPHGVAHQLLSKLMLSKDSLDLLLAKGLV 179

Query: 177 ECEERKPVARPWPQELEAKVDKPRLNQEQAIAIAAVNSQ-QGFGCFLLEGVTGSGKTEVY 235
           + E RK       +   A+ + P LN EQ  A  A+ +    F  FLL GVTGSGKTEVY
Sbjct: 180 QVEIRKHAPDARHEHWLAQPELP-LNPEQRAAYEAIRAGFDSFHAFLLAGVTGSGKTEVY 238

Query: 236 LNLITPVLARGEQALVLVPEIGLTPQTINRFRQRFNVPVEVMHSALNDTERLNAWLAARD 295
           L LI   L  G+QALVL+PEI L PQT+ RF QRFN  + ++HSA+ND ERL +WLAARD
Sbjct: 239 LQLIRETLQAGKQALVLIPEINLGPQTLARFEQRFNARIALVHSAVNDRERLESWLAARD 298

Query: 296 KVAGIVIGTRSALLTPFAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIVL 355
             A I+IGTRSAL TP    G+II+DEEHD SYKQQ+ LRYHARD+A++RA  E+IPIVL
Sbjct: 299 GEADIIIGTRSALFTPMKNPGLIIIDEEHDGSYKQQEGLRYHARDLALVRARQEDIPIVL 358

Query: 356 GSATPALETLHNALSGKYHHLQLTQRAGNALPTRNHALDVKGLYLESGLSAPLIAEMRRH 415
           GSATP+LE+LHNA +G+Y  L+L +RAG A   R   LDVK   L+SG+S P+   + + 
Sbjct: 359 GSATPSLESLHNAYTGRYGLLRLNERAGGAKQPRFLRLDVKSRPLDSGISGPMQQAIGQT 418

Query: 416 LSAGNQVMLFLNRRGFSPALMCHECGWIAECQRCDAYYTYHQHSNEMRCHHCGSQRPVLH 475
           L+AG QV++FLNRRGF+P L+CH+CGW++EC+RCDA  T HQ   E+RCHHCG    V  
Sbjct: 419 LAAGQQVLVFLNRRGFAPTLLCHDCGWMSECERCDARMTVHQRYGELRCHHCGHVERVPR 478

Query: 476 QCKGCGSTQLVTVGVGTEQLEAQLHTLFPEYRSVRIDRDSTRRKGSLESALTAIRKGEYQ 535
            C  CG   L  VG GTE+ E +L  LFP+Y  +R+DRDST RK ++      I+KG   
Sbjct: 479 HCPQCGKVDLRPVGAGTERAEERLGILFPDYPVLRVDRDSTSRKDAMNQLFATIQKGHPC 538

Query: 536 ILIGTQMLAKGHHFPDVTLVALLDVDGSLYSSDFRASERLAQLFIQVAGRAGRASKPGEV 595
           ILIGTQMLAKGHHFP VTLV++LD DG L+S DFRASER+AQL +QVAGRAGRA +PG V
Sbjct: 539 ILIGTQMLAKGHHFPRVTLVSILDADGGLFSGDFRASERMAQLIVQVAGRAGRAEEPGRV 598

Query: 596 VLQTHHPEHSLLQALLHKDYHHFALTALEERKLAQLPPYSFLSLFRAEANHTAQVEDFLR 655
           ++QTH  +H LL  L  + Y  FA  AL ER+ A LPP+S L+L RAEA+   Q E FL 
Sbjct: 599 IIQTHLADHPLLIQLTEQGYFAFAEQALSERRAAGLPPFSHLALLRAEAHKPGQAEGFLD 658

Query: 656 QVRETLR--CNPWFDSECMVLGPTPAPLAKRAGKFRWQLLLQTPNRTLMQKILQSARPAL 713
           +              S   +LGP PAP+ +RAG++R QLLLQ  +R  + ++L S   AL
Sbjct: 659 EACSAAERLLGELGLSGIELLGPVPAPMERRAGRYRAQLLLQATSRAPLHRLLSSWLLAL 718

Query: 714 QQLPLASKVRWSIDIDPQDL 733
           +Q+P   +VRWS+D+DP DL
Sbjct: 719 EQMPSGRQVRWSLDVDPVDL 738