Pairwise Alignments

Query, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas simiae WCS417

 Score = 64.7 bits (156), Expect = 3e-14
 Identities = 56/157 (35%), Positives = 77/157 (49%), Gaps = 19/157 (12%)

Query: 222 LLEGVTGSGKTEVYLNLITPVLARGEQALVLVPEIGLTPQTINRFRQRF---NVPVEVMH 278
           L+ G  G GKTEV +      +  G+Q  +LVP   L  Q  N FR RF    V VEVM 
Sbjct: 627 LVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPTTLLAQQHYNSFRDRFADWPVTVEVM- 685

Query: 279 SALNDTERLNAWLA--ARDKVAGIVIGTRSALL--TPFAKLGIIIVDEEHDSSYKQQDSL 334
           S     + +NA +A  A  K+  IVIGT   L        LG++I+DEEH    +Q++ L
Sbjct: 686 SRFKSAKEVNAAIADLAEGKI-DIVIGTHKLLSDDVKIKNLGLVIIDEEHRFGVRQKEQL 744

Query: 335 RYHARDVAVMRAHLENIPIVLGSATPALETLHNALSG 371
                     +A    + I+  +ATP   TL+ A+SG
Sbjct: 745 ----------KALRSEVDILTLTATPIPRTLNMAVSG 771