Pairwise Alignments

Query, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

Subject, 726 a.a., Helicase PriA essential for oriC/DnaA-independent DNA replication from Variovorax sp. SCN45

 Score =  402 bits (1032), Expect = e-116
 Identities = 236/585 (40%), Positives = 330/585 (56%), Gaps = 37/585 (6%)

Query: 180 ERKPVARPWPQELEAKVDKPRLNQEQAIAIAAVNSQQGFGCFLLEGVTGSGKTEVYLNLI 239
           +RK  A P  +  E+  +   L+ EQ  A+  + +  G   FLL G TGSGKTEVYL  +
Sbjct: 148 KRKTTAGPVAETAES-ANLIALSAEQTAALERIEAASG--TFLLVGSTGSGKTEVYLRCV 204

Query: 240 TPVLARGE--QALVLVPEIGLTPQTINRFRQRFNVPVEV-MHSALNDTERLNAWLAARDK 296
             +LAR    QALV+VPEI LTPQ   RF+ RF     V +HS + + +RL +WLAA   
Sbjct: 205 ADLLAREPEAQALVMVPEINLTPQLEARFKARFGEEAVVSLHSGMTNPQRLASWLAAHSG 264

Query: 297 VAGIVIGTRSALLTPFAKLGIIIVDEEHDSSYKQQDSLRYHARDVAVMRAHLENIPIVLG 356
            A IV+GTR A+      L +I+VDEEHD SYKQQ+  RY ARD+AV R   E   ++LG
Sbjct: 265 GARIVLGTRMAVFASIPGLKLIVVDEEHDPSYKQQEGARYSARDLAVWRGQREGAKVILG 324

Query: 357 SATPALETLHNAL-------SGKYHHLQLTQRAGNALPTRNHALDVKGLYLESGLSAPLI 409
           SATP+ E+ H +         G+Y  L +  R G         +D+     ++ +S  L+
Sbjct: 325 SATPSFESWHQSRPAEGDDPGGRYVRLAMPSRIGAGELPAVRLVDMNLQPPKTVISGALL 384

Query: 410 AEMRRHLSAGNQVMLFLNRRGFSPALMCHECGWIAECQRCDAYYTYHQHSNEMRCHHCGS 469
             + + ++ G Q M+FLNRRG++P L C +CGW +EC  C AY  +H+    +RCHHCG 
Sbjct: 385 DAIGQRIARGEQSMIFLNRRGYAPVLACGDCGWKSECPHCSAYRVFHKIDRTLRCHHCGF 444

Query: 470 QRPVLHQCKGCGSTQLVTVGVGTEQLEAQLHTLFPEY--------RSVRIDRDSTRRKGS 521
              V   C  CG+  +  VG GTE+LE  L  LF           R  RID DSTR++G+
Sbjct: 445 TERVPRACPACGNPDIAPVGRGTERLEEHLAELFAAVKRPDGGAVRIARIDADSTRKQGA 504

Query: 522 LESALTAIRKGEYQILIGTQMLAKGHHFPDVTLVALLDVDGSLYSSDFRASERLAQLFIQ 581
           LES L A+  GE  +L+GTQM+AKGH F  +TLVA ++ DG+L+SSDFRA ERL  L +Q
Sbjct: 505 LESQLAAVHSGEVDVLVGTQMIAKGHDFRRITLVAAVNPDGALFSSDFRAPERLFSLLMQ 564

Query: 582 VAGRAGR-------ASKPGEVVLQTHHPEHSLLQALLHKDYHHFALTALEERKLAQLPPY 634
            AGRAGR            E+ +QTHH +H L  AL   DY  FA   L+ER+ A +PP+
Sbjct: 565 SAGRAGRDAAYLASQGATAEMWIQTHHAQHPLFMALRQHDYAVFARQQLDERRAAGMPPF 624

Query: 635 SFLSLFRAEANHTAQVEDFLRQVRETLRCNPWFDSECMVLGPTPAPLA--KRAGKFRWQL 692
           +F +L RA+A   +  + FL    +     P  D   +V      PLA  + A   R Q+
Sbjct: 625 AFQALLRADAREQSVAQAFLNIAADQAEALPGAD---LVTRYPAVPLAIQRVANVERAQM 681

Query: 693 LLQTPNRTLMQKILQSARPALQQLPLASK----VRWSIDIDPQDL 733
           L+++P+R  +Q++L   +P L +L    +    +RW +D+DP  +
Sbjct: 682 LIESPSRAALQRLLAGWQPLLHELRRTPEGKGVIRWLVDVDPHSI 726



 Score = 37.4 bits (85), Expect = 3e-06
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 2/95 (2%)

Query: 31  GGRVQVPFGRQTLVGIV--QSLTHQSDFPIEQLKSVQAVLDDAPVWPDKLQSLLHWCSQF 88
           G  V+VP G++ ++G+V  + ++ +   P   LK V A LD      +  + L+ +  ++
Sbjct: 59  GTLVRVPLGKREVLGVVWNEPVSLEGAEPDMALKPVGAALDALAPLGEAWRDLVAFAGRY 118

Query: 89  YHYPLGETYANALPGALRKGKAAELTSHKEWRLTA 123
           Y   +GE    ALP  LR     +L    + + TA
Sbjct: 119 YQRSIGEIALAALPPQLRDLTTTQLARRLKRKTTA 153