Pairwise Alignments

Query, 734 a.a., primosomal protein N' from Vibrio cholerae E7946 ATCC 55056

Subject, 1158 a.a., Transcription-repair coupling factor from Sphingobium sp. HT1-2

 Score = 57.0 bits (136), Expect = 5e-12
 Identities = 67/265 (25%), Positives = 105/265 (39%), Gaps = 23/265 (8%)

Query: 161 EVSSTTLKALVEKGWIECEERKPVARPWPQELEAKVDKPRLNQEQAIAIAAVNSQQGFGC 220
           E++   LK   E+     E  +P A  +P  ++    +   +Q++AI     +   G   
Sbjct: 574 EIAGELLKTAAERALRPAEIAEPDAAGYPAFVDRFPYQETDDQDRAIGDVIEDLGAGRPM 633

Query: 221 F-LLEGVTGSGKTEVYLNLITPVLARGEQALVLVPEIGLTPQTINRFRQRFN-VPVEV-- 276
             L+ G  G GKTEV L         G Q +V+ P   L  Q    F +RF   P+E+  
Sbjct: 634 DRLVCGDVGFGKTEVALRAAFVAAMAGMQVVVICPTTLLARQHHMNFVERFRGFPLEIAR 693

Query: 277 MHSALNDTERLNAWLAARDKVAGIVIGTRSALLT--PFAKLGIIIVDEEHDSSYKQQDSL 334
           +   + D E         D    IV+GT + L     F +LG++IVDEE       ++ L
Sbjct: 694 LSRLVPDKEAKATKAGLADGTIDIVVGTHALLAKGLEFKRLGLVIVDEEQRFGVTHKERL 753

Query: 335 RYHARDVAVMRAHLENIPIVLGSATPALETLHNALSGKYHHLQLTQRAGNALPTRNHALD 394
           +    DV V+            +ATP   TL  A+SG      +     + L  R + + 
Sbjct: 754 KSLKTDVHVLTL----------TATPIPRTLQMAMSGLRELSVIQTPPVDRLAVRTYIMP 803

Query: 395 VKGLYLESGLSAPLIAEMRRHLSAG 419
             G+ +   L       +R H   G
Sbjct: 804 WDGVVIREAL-------LREHYRGG 821